Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200
| | | | | | | | | | |
| Seq | SMNAGKPQAAVAKAKSFYFGSQRILIQYRADSPELQTGYLSYKKGAMTYTINTGDYMYICAKAEKNNGFTELKLAKLSAPADGTAANPATGYTQFQFAAEITASSTDHSLLDKLNTFSTDDDEGYYYALVDDQCKVIMTYWCETFIDDISKSTDTASTYSKTTIFPTDNYYVDGYLFGAYPERYSMLGYTMFSEVDLPADPSASTTASATP |
1 | 3zmnA | 0.12 | 0.10 | 3.70 | 0.61 | SPARKS-K | | -------------AAVQVGGWGFAWIDNLAWRSGEYFALAQMKPETAHFRIAAQERIYLRGQKVSDPDSRTVNLPFLMQTPQGAPTLPSTYHPDVAVWAKVVITAINYSTFTEPAGVTASDGIEIYYVHGDGQFRLRVATVFNQSFSTMHSVDQNNVETMIAWVELVPGTRLVLEVFTVWNERSGHYIQIAAMGRRIEV------------ |
2 | 1irpA | 0.12 | 0.07 | 2.54 | 0.51 | FFAS-3D | | --------------KTFYLRNNQLVAGYQGPNVNLEEKIDVVPIEPHALFLGHGGKMCLSCVKSGDE--TRLQLEAVNITDLSENRKQDKRFAFIR-------SDSG-----PTTSFESAACPGWFLCTAMEADQPVS----------LTNMPDEGVMVTKFYFQEDE------------------------------------------- |
3 | 3h8tA | 0.12 | 0.05 | 1.82 | 0.29 | HHpred | | -----TEMDQATTVDGY-TVDVLITMEYEEQSEVASGGWLEFSHGPAGPTYKLSKRVFFVRGAD-GN-IAKVQFTDYQDAE------LKKGVITFTYTYPVK------------------------------------------------------------------------------------------------------------- |
4 | 5n8pA | 0.11 | 0.10 | 3.79 | 0.64 | MUSTER | | TLNTSSGNTNTSGAAQTVTAGAGQNLTATTAAQ--AANNVAVDGGANVTVASTGVTSGTTTVGANSAASGTVSVSVANSSTTTTGAIAVTGGTAVTVAQTAGNAVNTTLTQADVTVTGNSSTTAVTVTQTAAATAAGRVNGAVTITDSAAASATTAGKIATVTLGS----FGAATIDSSALTTVNLSGTGTSLGIGRGALTATPTANTLTL |
5 | 3wiqA | 0.12 | 0.09 | 3.32 | 0.89 | CNFpred | | -----------------------RVLDLK----GILYRKLRLKDKGRITTIE---GFRFVSMNNKNLIVQKYDVVCEN----------YSAVLNVESFIDATTVNSKDVPNDRVKHYEIDK-DGIYLGITTKKYKVGIASSTKVLL---------QRCYFNRFTKDLGYIITENFEVEAK-ERYEIEKLTVLVSSREKNVGDVFETCTNKL |
6 | 1cvrA | 0.14 | 0.13 | 4.40 | 0.39 | HHsearch-2 | | AEDNGESIQHENVIANLLYGYTKIIKCYD-PGVTPGISLVNYTGHGSETALTNSNLPFIFDVACVNGDFLFFAEALMRAQKDGK-P---TGTVAIIASTIDQYWAPPMRGQDEMNECEKGENMLDTWTVFGDPS---LLVRTLVPT-EMQVTAPANISASAQTVCDYNGASDDGDMVGT---AIVKDGKAIIKLNESIADETLTLTVVGYN |
7 | 3mh8A | 0.09 | 0.09 | 3.21 | 0.67 | Neff-PPAS | | --PLPDAKPLVEEATAQTKALKSAHMVLTVNGKIPGLS---LKTLSGDLTT-NPTAATGNVKLTLGGSDIDADFVVFD--GILYATLTPNQWSDFGPAADIYDPANPDTGLANVLANFADAKAEGRDTINGQNTIRISGKVSAQAVNQIAPPFNATQPVPATWIQETGDHQLAQAQLDRGSG---NSVQMTLSKWGEKVQVT--------- |
8 | 2k57A | 0.21 | 0.05 | 1.51 | 0.34 | HHsearch | | ------------MA-SPTNDGREIQ---AVDTPKYESGFYEFKQDGKQTRINKDQVRTVKDLLE--------------------------------------------------------------------------------------------------------------------------------------------------- |
9 | 2jkbA1 | 0.11 | 0.09 | 3.45 | 0.54 | SP3 | | -----LSISPIFQGGSYQLNNKSIDIS-SLLLDKLSGESQTVV---MKFKAKPNSLQALFGLSNSKAG---------FKNNYFSIFMRDSGEIGVEIRDAQKGINYLFSRPASLWGKHKGQAVENTLVFVSDSKDKTYTMYVN---GIEVFSETVDTFLPISNINGIDKATLGAVNREGKEHYLSIDEISLFNKA-ISDQE-VSTIPLSNP |
10 | 2vbkA4 | 0.10 | 0.08 | 2.82 | 0.73 | PROSPECTOR2 | | CIGFK----------NAVYVHDCLDLHMEQL--------DLDYCGSTGVVIENVNGGFSFSNAADADGTEQFTGIYFRTPTSTQSH-------KIVSGVHINTANKN------------TAANNQSIAIEQSAIFVFVS-----------GCTLTGDEWAVNIVDINECVSFDKCIFNKPLRYLRSGGVSVTTEVQKPEGRYNTYRGCSGV |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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