Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | WNDDYTPALFVHSPGGDTFPMWFTFDMGVTAKLSRYKFYHLFMEEHAFQRGNLKTWEVWGRTDTPPADGSWDGWTKLMDCESYKPSGLPVGQHTAEDWEYLQAGEDFEFPAEAPPVRYIRFKVLETWGGMDFIHFTEFTFWG |
1 | 4lqrA | 0.16 | 0.13 | 4.45 | 1.64 | SPARKS-K | | VDGDEN--TIWHSAYQAKLPVSITIKLDKAYDLNQIDYLPRQNSR----NGHVTEYKIETSLDN-------ENWTEVRTGNLEVNEAGNALANRGY----------NPIRFNTINAQYLRFTALKTLGDNKYASAAELVFYG |
2 | 4lqrA | 0.17 | 0.14 | 4.63 | 1.94 | FFAS-3D | | ---DGDENTIWHSAYQDKLPVSITIKLDKAYDLNQIDYLPRQNSR----NGHVTEYKIETSLDNEN-------WTEVRTGNLEVNEAGNALA----------NRGYNPIRFNTINAQYLRFTALKTLGNNKYASAAELVFYG |
3 | 3hnmA | 0.26 | 0.21 | 6.51 | 1.54 | HHpred | | IDNNPG--TQWLCRWDEPLPYYFVFD-GKEYTLFRFGFANPVAPAAHVWAGTSKAGYVEASID-----N--ENWVKLKDWTSPKI-GEP--N-------------V--NDVPATQARYIRFVITDTYPTGLRVSLGEVYAWG |
4 | 4lqrA | 0.18 | 0.15 | 4.83 | 1.49 | MUSTER | | VDGD--ENTIWHSAYQDKLPVSITIKLDKAYDLNQIDYLPRQNSR----NGHVTEYKIETSLDN-------ENWTEVRTGNLEVNEAGNALAN--------RGYNPIRF--NTINAQYLRFTALKTLGDNKYASAAELVFYG |
5 | 4lksA | 0.18 | 0.15 | 4.83 | 1.79 | CNFpred | | VDGDEN--TIWHSAYQDKLPVSITIKLDKAYDLNQIDYLPRQNSR----NGHVTEYKIETSLDN-------ENWTEVRTGNLEVN-------EAGNALANR-GYNPIRFNT--INAQYLRFTALKTLGNNKYASAAELVFYG |
6 | 1w8nA | 0.20 | 0.15 | 4.96 | 1.01 | HHsearch-2 | | IDGNPS--TFWHTEWSRGYPHRISLDLGGTHTISGLQYTRRQNS----ANEQVADYEIYTSLN-----G--TTWDGVASGRFTTS----------------LAPQRAVFP--ARDARYIRLVALSEQTGHKYAAVAELEVEG |
7 | 4lqrA | 0.17 | 0.14 | 4.63 | 1.97 | Neff-PPAS | | ---DGDENTIWHSAYQDKLPVSITIKLDKAYDLNQIDYLPRQNSR----NGHVTEYKIETSLDN-------ENWTEVRTGNLEVNEAGNALA----------NRGYNPIRFNTINAQYLRFTALKTLGNNKYASAAELVFYG |
8 | 1jhjA | 0.12 | 0.09 | 3.25 | 1.39 | HHsearch | | RDDNLE--TYWQSDG--SQPHLVNIQFRRKTTVKTLCIYADYKS---DESYTPSKISVRVGNN-----F--HNLQEIRQLELVEPS----------------GWIHVPLTDKPTRTFMIQIAVLANHQNGRDTHMRQIKIY- |
9 | 2j1aA | 0.15 | 0.12 | 4.01 | 1.16 | PROSPECTOR2 | | SDGDMN--TFWHSKWSSPGPHHLTLELDNVYEINKVKYAPRQDS----KNGRITGYKVSVSLDG-------ENFTEVKTGTLEDNAAI------------------KFIEFDSVDAKYVRLDVTDSVSRGKFATAAEVNVHG |
10 | 1jhjA | 0.13 | 0.10 | 3.43 | 1.23 | SAM | | RDDNLE--TYWQSDG--SQPHLVNIQFRRKTTVKTLCIYADYD-----ESYTPSKISVRVGNN-----F--HNLQEIRQLELVEPSG----------------WIHVPLT-DPTRTFMIQIAVLANHQNGRDTHMRQIKIYT |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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