Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | WRQIVTAPDRDRLARWRAAWIAGLDKATAAGSAAQVAAQGPLLKPDAALDDPLPPQGDYSCRVIKMGAQTKGLMDYVAYPYFNCRISMLDGRLHLAKLNGSQRPVGDIFPDEGRRMIFLGAMTLGDEARPLPYGRDGERDMVGVVERVAPQRWRIAFPYPRWESTIDIFEL |
1 | 2nyzA1 | 0.07 | 0.06 | 2.44 | 0.81 | SPARKS-K | | SVDLSQIKRGDEIQAHVTECAGILKDVLSKNLH-ELQGLCNVITGRLPFPSVGGTPVNVRVLVVAESNTPEETPE----EEFYAYVELQLYTFGLVVFTSDY---MTVWMVDVGMLTRATFL------------EQWPGAKVTVMIPYSSFTWCGELGAISEESAPQP--- |
2 | 5vmmE | 0.07 | 0.06 | 2.62 | 0.60 | FFAS-3D | | -KAKTLERQVYELNKIKAEYKKKLEDTKKALDEQVKSAITEFQNVQ---PTNEKMTDLQDTKYVVYESVENNESMMDTFVKHPIKTGMLNGKKYMVETTNDDYWKDFMVEGQRVRTI----------------SKDAKNNTRTIIFPYVEGIVKVHVKTIDYDGQYHVIVD |
3 | 3h0nA | 0.09 | 0.05 | 2.04 | 0.29 | HHpred | | -VAQLGDDHVEGFVELARLLHTAIDALSNGQVATAATALNHLLRKHPATPELAQDPDTWRLHHHPLDAELVPWTAEIGHQ-NVRRFGIHRCDRVYFDTSGTRQYCSL---------------------------------------------------------------- |
4 | 5n8oA5 | 0.14 | 0.14 | 4.76 | 0.66 | MUSTER | | KGEAFPDIPMTLYEAIVRDYTGRTPEARETHLNEDRRVLNSMIH-DAREKAGELGKEQVMVPVLNTANIRDKNPDALALVDNVAGISKDDGLITLQDAEG---NTRLISPREAVTLYTPDKIRVGTGDRKSDRERGYVANSVWTVTAVSGDSVTLSD-RPGQERAEQHIDL |
5 | 4mveA | 0.14 | 0.12 | 3.99 | 0.64 | CNFpred | | -------------MDAEQRLAKIIASGDE-CDRATVEELYDRLAPVP----VDFMLGTWRGGIFDRGDALAGM--LLGMNWYGKRFIDRDHVEPLLCRS----PDGSIYSYEKLGLARLREVALRGTSAAMIYD---KQPIIDHFRRVNDDMVVGAMDAKG-DILYFHLTR |
6 | 2lc0A | 0.13 | 0.05 | 1.82 | 0.38 | HHsearch-2 | | YIITLGVHDFEKLGADPELKSTGFARDLAD--Y--IQEQGWQTYGDVVRFSSNLHTGQFRARGTVNPDVETH--------------------------------------------------------------------------------------------------- |
7 | 3g3lA2 | 0.09 | 0.09 | 3.52 | 0.71 | Neff-PPAS | | -PPVVPPTDPETDINEGEATKVADKAVEVAKPSESTVTDLAGTTATPEEKKALDETLEAGGKVGETTPEVLADGSILAITPVKFTNPIQDAPAVPYFYNEGCELTGDVKEVAAKAFLSNAAKALNNAGFVQKIGVLNGYSILGYTIKGQLVSKKLTFLISGKYYEGIVSYQ |
8 | 3k2tA | 0.12 | 0.04 | 1.23 | 0.24 | HHsearch | | ------------------------------------------------------------------------------------EI-------VRTKQ---KPMVLQMNLLGHSFYVYT----------------DAETNGTNIVYSRKDGKYGLIET------------- |
9 | 2yvtA | 0.08 | 0.08 | 2.97 | 0.56 | SP3 | | RREPNRKVIHENEHYIIETLDKFFREIGELGVKPLKIFLRAAYEAETAYPNIRVLHE----GFAGWRGEGGLLTEHEFEEDFVLKYPRWYVEYILK----------FVNELKPRRLVTIFYTPPIGEFVDRTPEDPKHHGSAVIIKSLNPGNTIVVNPGEFEEGRYAFLDL |
10 | 1s8eA1 | 0.09 | 0.09 | 3.37 | 0.71 | PROSPECTOR2 | | MKGYEQFHKPQREEEFAEAFKNALEIAVQENSPGTLKKAIALLQRGPSVLNLLEDFGLVYVIGMRKEKVENEYLTSERLGNGEYLVKGVYKDLEIHSSAWFEANKEILLFRPTDNAILMLEVSEARGEDYFEIGLGDLPEGYLYYYETSYSGSPVVYPERWVNKGFYIVED |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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