Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | LGLAFEALSSNDEEMRRAAGLALVRYKRHMEGRKEFLDRNVWFHFYGGVQNGLGALGKVMDTVCPRLPHVSANFLAKASIVLTTPLAQLYKPIADYILSKETYNLAVVPNFNFMFLSADVDHHGHREFLLGVIADGVKCEEDFDVLDLSGALETLMVFFSCPFATIDTNLRILGVINTIARIPKCAAMLMDKYAIVAW |
1 | 4db6A | 0.15 | 0.13 | 4.40 | 1.07 | FFAS-3D | | LPQMVQQLNSPDQQELQSALRKLSQI---ASGGNEQIQAVIDAGALPALVQLLSSPNEQ-----------ILQEALWALSNIASGGNEQIQAVID---------AGALPALVQLLSSPNEQILQEALWALSNIAS--GGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQKQAVKEAGALE- |
2 | 4rv1A | 0.16 | 0.16 | 5.34 | 1.43 | SP3 | | VEVLVKLLTSTDSEVQKEAARALANIASGDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEASGPDEAIKAIVDAGVEVLVKLLTSTDSEVQKEAARALANKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG--PDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGPDEAIKAIVDAGGVEV |
3 | 4hm9A | 0.11 | 0.10 | 3.64 | 0.93 | SPARKS-K | | VALLVQNLERLDEEEADGVHNTLAIVENMAEFRPEMCTEGAQQGLLQWLLKRLKAKMPFDA---------NKLYCSEVLAILLQ-DN---DENRELLGELDG--IDVLLQQLSVFKPSTAEEQEMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKI---SRSSALKVLDHAMIGTDNCHKFVDILGLRTI |
4 | 4rv1A2 | 0.16 | 0.13 | 4.19 | 1.04 | FFAS-3D | | VEVLVKLLTSTDSEVQKEAARALANI---ASGPDEAIKAIVDAGGVEVLVKLLTSTDSE-----------VQKEAARALANIASGPDEAIKAIVD---------AGGVEVLVKLLTSTDSEVQKEAARALANI--ASGPTSAIKAIVDAGGVEVLQKLLTST--DSEVQKEAQRALENIKS----------------- |
5 | 2z6gA1 | 0.11 | 0.09 | 3.30 | 0.50 | HHpred | | IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRPQMVSAIVRTMQNT----------NDV----ETARCTSGTLHNLSH--HREG---LLAIF-----KSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQE--GAKMAVRLAGGLQKMVALLNK--TNVKFLAITTDCLQILAYNQES-KLIILASGGPQ- |
6 | 3opbA | 0.14 | 0.13 | 4.51 | 0.90 | MUSTER | | VKIILEYLANKGEPIRILGCRALTRMLIFTNPGLIFKKYS-ALNAIPFLFELLPRSTPVDDNPDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVY----WSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFPQSLRNFNILVKLLQLS--DVESQRAVAAIFANIATTPLIAKELLTKKELIE- |
7 | 2gl7A | 0.14 | 0.13 | 4.29 | 0.96 | CNFpred | | LGTLVQLLGSDDINVVTCAAGILSNLTCN-----NYKNKMMVCGGIEALVRTVLRAGD---------REDITEPAICALRHLTSR-HQEAEMAQNAVRLH-----YGLPVVVKLLHPP--SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRA-RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLF |
8 | 4rxhB | 0.13 | 0.13 | 4.53 | 0.53 | HHsearch-2 | | VPIFVELLGSPEPDVREQAVWALGNIAGDSPQCDYVLSCGALRPLLTLLGDSKLSLSNFCRGKTPQPDNTIAPALPVLAKLVYSLDDEVLIDACWAISYLSVIEAGIPRRLVELLMHASTSVQTPALRSVGNIVTG--DDVQTQVIINCGALPCLLSLLSS--NKDGIRKEACWTISNITAGNSAQIQSVIDANIIPP |
9 | 4db6A | 0.15 | 0.13 | 4.41 | 1.00 | Neff-PPAS | | LPQMVQQLNSPDQQELQSALRKLSQIASG---GNEQIQAVIDAGALPALVQLLSSPN-----------EQILQEALWALSNIASGGNEQIQAVIDAG---------ALPALVQLLSSPNEQILQEALWALSNIASG--GNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQKQAVKEAGALEK |
10 | 4db6A | 0.14 | 0.12 | 4.13 | 0.58 | HHsearch | | LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQQAVIDAGALPALVQ----LLSS-------PN---EQ-ILQEALWALSNIASGGNEQIQ----AVI-----DAGALPALVQLLSSPNEQILQEALWALSNIAS--GGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQKQAVKEAGALE- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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