Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | FFSYEWKGLEIAKNLADQAKKDDERIDKLMKESDKNLTPYKAETVNDLYLIVKKLSQGDVKKAVVRIKDGGPRDYYTFDLTRPLEENRKNIKVVKNGEIDSITWY |
1 | 2k3uA | 0.30 | 0.19 | 5.77 | 1.46 | HHpred | | -------------GLPTTLGKLDERLRNYLKKGTKNSAQF--------------------EKMVILTEN---KGYYTVYLNTPLAEDRKNVELLGKMYKTYF--- |
2 | 2k3uA | 0.28 | 0.19 | 5.82 | 2.20 | HHsearch-2 | | -----------NSGLPTTLGKLDERLRNYLKKGTKNSAQF--------------------EKMVILTEN---KGYYTVYLNTPLAEDRKNVELLGKMYKTYFFKK |
3 | 2k3uA | 0.29 | 0.19 | 5.81 | 2.98 | HHsearch | | -----NS------GLPTTLGKLDERLRNYLKKGTKNSAQF--------------------EKMVILTEN---KGYYTVYLNTPLAEDRKNVELLGKMYKTYFFK- |
4 | 2k3uA | 0.30 | 0.20 | 6.06 | 0.83 | SPARKS-K | | -----------NSGLPTTLGKLDERLRNYLKKGTKNSAQF--------------------EKMVILTENK---GYYTVYLNTPLAEDRKNVEL--LGKMYKTYFF |
5 | 2k3uA | 0.32 | 0.15 | 4.59 | 0.64 | FFAS-3D | | -----------------------------------------GKLDERLYLKKGTKNSAQFEKMVILTENKG---YYTVYLNTPLAEDRKNVELL----------- |
6 | 5u75A | 0.29 | 0.16 | 4.93 | 0.59 | HHpred | | ---------------------------------------NKEVTLKELDHIIRHLPKGN---IVINTKNG---GKYTLESHKELQKNRENVEIN-TDDIKNVTFE |
7 | 5ts4A | 0.22 | 0.20 | 6.30 | 0.70 | MUSTER | | -MS---EEAKIAIELFKEAMKDPERFKEMCSRIESNGQEYRG--SEECKKFAEEMKK--TEVRVERYRSDGDRFEIELRVNK---TFRMEIRMRKNGEFRIEEMR |
8 | 1xeeA | 0.32 | 0.20 | 6.03 | 0.53 | CNFpred | | --------------LPTTLGKLDERLRNYLKKGTKNSA--------------------QFEKMVILTEN---KGYYTVYLNTPLAEDRKNVELL--GKMYKTYFF |
9 | 1qilA | 0.19 | 0.14 | 4.60 | 0.38 | HHsearch-2 | | KYWPKFDKKQLA------ISTLDFEIRQLTQIH----GLYRSS-----------DK--TGGYWKITMNDG---STYQSDLSKKFEYNTEK-PPINIDEIKTIEAE |
10 | 2k3uA | 0.32 | 0.21 | 6.30 | 0.84 | Neff-PPAS | | ------------SGLPTTLGKLDERLRNYLKKGTKNSA--------------------QFEKMVILTENKG---YYTVYLNTPLAEDRKNVEL--LGKMYKTYFF |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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