Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | MNSEQQALVEMPIWLVIFLSLVGGVSGEMWRADMAGVSGWFIFRQVLLRSGACVVCGLSTIMLLYSAGMSMWSASAIGCLTATAGADVAIGLYKRWVAKRLGVCDVTSRSGEP |
1 | 4r0cA | 0.10 | 0.10 | 3.63 | 0.84 | SPARKS-K | | FTGFAPLGVVLVAMLGLGVAEQSGLLSVSLASLVRRSSGGALVFTVAFAGVLSSLLIPLAGLVFQLAGRPPIAGIATAFAAVSGGVGPVDATLAGLSTEAAHIIDPDRTVAAT |
2 | 4xydA1 | 0.08 | 0.07 | 2.81 | 0.83 | FFAS-3D | | MKYQSQSIALVYFAVALGLFAIQVSGGLLLGWIYVSPNVRMLHTNSLIVWLLLGFMGAAYFVIPEESEREIMVLGTLGVVVTYLFVKMGIVVAALIFMYNI------------ |
3 | 5gufA | 0.13 | 0.12 | 4.00 | 0.45 | HHpred | | VDWRIDN--ILEAIILMLPAMIANATPVVAGGLPDGLGDGKTIEGLLAGFAAGSAAGVLAALASG--NMLLAVHSPAIA----LGAL-AGDMAGSFVKRRLGIER-GRPAP-- |
4 | 5ezmA | 0.12 | 0.12 | 4.34 | 0.72 | MUSTER | | DRLSPRSWGKQLIGMAIVAACGLLASPVVATLNANHIPNSFYRAYAVWVAVAFVVMLLGIAVARLLLRRGVLPSVAVYAMGMYLGFTVALLGHETVGRPASGA-AQKLTPEMP |
5 | 4mt1A | 0.06 | 0.05 | 2.29 | 0.77 | CNFpred | | ------FQVGFVTVMGLSAKNAILIIEFAKDLQAQGKSAVEAALEAARLRFRPIIMTSFAFILGVVP-SASQRAIGTTVFWGMLVTLLSVFLVPLFYVVVRKFF--------- |
6 | 5gufA | 0.14 | 0.12 | 4.24 | 0.42 | HHsearch-2 | | VDWRIDNILEA--IILMLPAMIANATPVVAGVLRRLLGDGKTIEGLLAGFAAGSAAGVLAALAS---GN---MLLAVHSPAIALGAL-AGDMAGSFVKRRLGIER-GRP--AP |
7 | 5ezmA3 | 0.12 | 0.11 | 3.73 | 0.80 | Neff-PPAS | | ---SPRSWGKQLIGMAIVAACGLLASPVVATLNANHIPNSFYRAYAVWVAVAFVVMLLGIAVARLLLRRGVLPSVAVYAMGMYLGFTVALLGHETVGRPAS------------ |
8 | 5gufA | 0.12 | 0.11 | 3.77 | 0.83 | HHsearch | | VDWRIDNI-L-EAIILMLPAMIANATPVVAGVLRRLLGDGKTIEGLLAGFAAGSAAGVLAALAS---GN---MLLAVHSPAIALGAL-AGDMAGSFVKRRLGIER-GRPAPL- |
9 | 6a2jA3 | 0.08 | 0.07 | 2.81 | 0.85 | SP3 | | GKKMQFHMIGILIYSYIVVLLLFVWIIVAAVHAITSYKDQKQIFWGWISCLIFITLQALSGIMIVYSELALGFALAHSFFIACLFGVLCYFLLLIARFRYES----------- |
10 | 1gaka | 0.10 | 0.10 | 3.63 | 0.56 | PROSPECTOR2 | | FDDVVVSRQEQSYVQRGMVNFLDEMHKLVKRFRDMRWNLGPGFVFLLKKVNRERMMRYCMDYARYSLPVNKKTLTKMGRFVGYRNYGVIRELYADVFRDVQGFRGPKMTAKNE |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|