>PF15928 (304 residues) EVIEQLDGKECLCCFWKIPDEGSHIPVYLTKYAQELTMTKYVPADDFHEEQEIPPILTPM EIKVEVEVDDDEEWVEEPEPETAAQREAREEAEMAEEEEFEEEEEEAAAAGPPEPPPMDM PPMDLGLDTVEEPELEEEDEEKHVEEAPKKRTRKITVQVPPIWVPTDHRTHAALIYIFFR PATTAFLPPDPKPEPPHVIMAFDAYKKKDLIAHAERNKVDVPLYGFFTSDDPDEAKFIAN SDIKYSQKEHTATDKLIFKVNKATSNTMLSLVTYGPSYVSPNTVIGRDEAKKFFPESYKT YEQE |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | EVIEQLDGKECLCCFWKIPDEGSHIPVYLTKYAQELTMTKYVPADDFHEEQEIPPILTPMEIKVEVEVDDDEEWVEEPEPETAAQREAREEAEMAEEEEFEEEEEEAAAAGPPEPPPMDMPPMDLGLDTVEEPELEEEDEEKHVEEAPKKRTRKITVQVPPIWVPTDHRTHAALIYIFFRPATTAFLPPDPKPEPPHVIMAFDAYKKKDLIAHAERNKVDVPLYGFFTSDDPDEAKFIANSDIKYSQKEHTATDKLIFKVNKATSNTMLSLVTYGPSYVSPNTVIGRDEAKKFFPESYKTYEQE | |||||||||||||||||||
1 | 2pffB | 0.10 | 0.10 | 3.50 | 1.07 | HHsearch-2 | --MDAYSTRPLTLSHGSLEHVLVKTKELIKNYITARMAKRPFDK-KSNSALAVGEGNAQLVAIFGGQGNTDDYFEEHVLVGDLIKFSAETSERTTLDAEKVFTQGLNLEENPNTPDKDYLLVIQLKLLGFTPGELRKGTGHSQVTAVAIAE--------TDSWE-SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILSILTQEQVQDYVNKTNSHLISNGAKNLVVSGPPQSLYGLNLTLRKAKAPSRISERKLKF------SNRFLPV--ASPF-HSH-LLVPASDLINKDLVKNNVSFNA | |||||||||||||
2 | 3tnfB | 0.08 | 0.08 | 3.21 | 1.09 | Neff-PPAS | QAIKRAQEEELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTD---SEELSLSEINEKMEAFSKDSEKLTQLMEKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSNKDQEVVEHEGQFYLLQKGQWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNLIMSTDPKENEEATKLLHKHNGLNLKLANLQDMLAVHRKEKSFFNESLNDAHYVIGKDQQLFNLGGKFYPIHKEQKILEKDGKFYLLKQGEDWESIKDSPEKQKKAEHDFHKLQYETPMT | |||||||||||||
3 | 4r2jA | 0.10 | 0.08 | 2.81 | 0.67 | SPARKS-K | ------MYQNMLVVI---DPNQDDQP--ALRRAVYLHQRIGG------------------KIKAFLPIYDFSYEMTLLS-PDERTAMRQGVISQRTAWIREQAKYYLEAGVP-------IEIKVVWHNRPFEAIIQEVIAGSHDHDRLEAVIFTRKCPSPVWMVKDYHNALNEKLVKETLQLAEQVNHTE-----VHLVGAYPVTPRGQHLLAMKALRQKFSIVTHVEKGLP--EEVIPDLAEHLQ-------AGIVVLGTVFLGNTAEQVIDHCDLLVIKPDE-------------------- | |||||||||||||
4 | 5x6oG | 0.11 | 0.10 | 3.58 | 0.54 | FFAS-3D | ETVGEFSSDD--------DDDIGTRPPRFTQIPPSSAATQIPTTLEVTTTTLNNKQSKNDNQVNQLNKAQGEASMDNIEREKEKNIQAVKVNELVKHLQELAKLKQELQKLEDEKKFLQRGKSKREVITNVKPPSTTLNTITPDSSSVAIEAKPQS--------PQSKKRKISDNLLLFLESILLHQIIGADLSTIEILFVIAKGAGKSIVSLLLRCKKTLTL----DRFIDTLLEDIAVLIKEISVHPNESKLAVPFLVA-----LMYQIVQFRPSATHNLALKDICDLIRIYHHVLKVPIHE | |||||||||||||
5 | 3j08A | 0.11 | 0.08 | 2.97 | 0.40 | HHpred | -----------------------ATPTALTVGMGKGAELGILIKNADALE-----VAEKVTAVIFDKLTKGKPEVTDLDERELLRLAAIA------------------ERRSE-------HPIAEAIVKKALEHGIEL-----GEPEKVEVIAGEGVVADGILVGNKRLMEDNEVELALEKLEREAKTAARN-GRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAVLPAKEVVAFVGDINDAPALAQADLGIAVGS-GSDVAV----------------- | |||||||||||||
6 | 6gngA1 | 0.11 | 0.10 | 3.54 | 0.72 | MUSTER | ------KKLTIVFVGSECTPWSKTLGDVMRDLPVNLAQRGHRYDQYFDAWD------TAVRSSIKVNGKLEDVGFFHITSKGVDRIFIDHPWFLAKVWGITGNKLYGAKTGVDYPDNPMRFALMCQAALEAPLRIPLPDPAGTVYGED-------------FVC-----WHSALVPIYLKANYKTRGLYQN---AKSIFLLRFPLEFWPALNLPEAAKKDLVFESCFAPPPLDGISEQPIISLKFLQAGFIHADRICT------SPQFAAEVASGPRGGVELDKYIRAKWKKRVLVYEKVFYET | |||||||||||||
7 | 5ktlA | 0.13 | 0.08 | 2.85 | 0.81 | CNFpred | ELAAHLVGTDTLVVCGTTGES-DEEYNLFVEVLQTVA---------------------KAKVIAGCGSN--------------------------STKEAIAATQKAAKI---------------------------------------------GVHGTLQVVPYYNKPPQAGLYQHFQAIAQACP--------DLPLLLYNVPGQNLSPETVVRLAEIDNIIGVMEASNLDQAGEIRRS--------TPKEFQIYAGDDS---LTLPLLAIGAKGVVSVASHLVGNQLQQMIQAFNSGQVTV | |||||||||||||
8 | 1vt4I3 | 0.11 | 0.05 | 1.80 | 0.83 | HHsearch-2 | ---------------------EYALHR---SIVDHYN-----IPKTFDSDDLIPPYLDQYFY---SHI--G-HHLKNIEHPE------------------------------------RMTLFRMVFL----------------------DFRFLEQKIRHDSTAWNASG--------------------------------------SILNTLQQLKFYKPY------ICDNDPKYERLVNAILDFLPKI---EEN---LICSKYTDLLRIALM-------------------AEDEAIFEEA | |||||||||||||
9 | 3ug6A | 0.07 | 0.06 | 2.53 | 0.82 | Neff-PPAS | -YLAEKGLKVVIVST----DPAHSLRDIFE-------QEFGHEPTKVKGYDNLYVVEIDPQKAMEEYKEKLKAQIEENPFLGEMLEDQLEMAALSPGTDESAAFDVFLKYMDSNETLRFLGMPEVMDKYMTKLIKLRKQMSGFMKMMKKLLPFD----------YDKMLEELEKMKERIVRARNILS--DPERTAFRLVVIPEEMSILESERAMKALQKYIPIDAVIVNQCDFCRARRELQLKRLEMIKEKFGDKVIAYVPLL-----------------RTEAKGIETLKQIAKILY------ | |||||||||||||
10 | 1zpwX | 0.12 | 0.03 | 1.05 | 0.35 | HHsearch | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GKRLYAVAYDIPRRVKLANLLKSYGE-RVQLSVFECYDERLLEDLRRRARRLLD---LGQDALRIPVA-GQ------VEVLGVGPLP-E---------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |