Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| Seq | MAMSIKGVNTGVIRKANEFIALALKIKEPRNKESLFFLTALELRDLLFALESRLHQKHHLSPNARQQYEKARDRVSKKMLESIPAIQEEELKNADINRRVNTLTLVDDQSENIMLSFTLHDGKTCELMINELQIDVLVRAIIRAIDNAGMRELVLRITSLLDFLPLYDADCLDNGNLEYDAYAQPEWKHNLFSHYLAVLYRYTDETGKTHFSGAVVKNRTPSGSKEAEAISRRLLDFSPRLKKLAGKPCQVFVRTLTADKTHKLTQEQCLRALHHLRVQSVEK |
1 | 2oolA | 0.08 | 0.07 | 2.69 | 0.59 | SPARKS-K | | -----TECDREPIHIPGAIQGYLFVVSETDLRIASVSANVEDLLR---------QPPASLLNVPIAHYAASAARLTHALHGA--------------INPIRLDVVTPDGERAFNGILHRHDSIVILELEPRDEFFRSVRVAIRRLQTAACWIAASEVRRITGFDRIKVYQFAADWSGQIPSLLPAQSRALYTINPVRIIPDIGYRPSPLVP------DINPRLGGPIDVLRSVSPTHLEYMVNMGMHAALWGMISCHNLTPRFVSCELIAQVLTWQIGVLEEA |
2 | 4dmzA | 0.16 | 0.12 | 3.89 | 0.75 | FFAS-3D | | -----------------------------------------SLRSSL----LGLRQLLRELPGDEAPLDALAETVLALLAQYGSLLVRTCLERGELRALQVCVPLVDTDGRILALLAVEQMP---FFVFNERTFSILAGHIADLLQDIDAQRFSQYLKRSLLDACLYAFELTDARY-------GEEVQRLLEGSQRGVQLRLRNDEGRRVL--LVLLPLT--SAEGSQGYLQRLRI---LFAERFGQGVRIRQYELDAGNDR----QALGHFLFN-------- |
3 | 5dztA1 | 0.10 | 0.08 | 2.97 | 0.33 | HHpred | | ------------------------------------FIYYLRFKKDIIAFYTCYPELMRITVVRMRYFLDNTKQMLIRVTEDLPSIQNC-FN-IQS-SELNSISESQGDRGKTVSTLTFSDGKKIVYKPKI-NSENKLRDFFEFLNK-E---------LEADIYIVKKVTRNTYFYEEYIDNIEIEEVKKYYGKLIGIAFLFNVTDENIIAHGEYFQQNIPIEFNSATVDAKYKYLDSI--MVTGLVP-----KNTPIMNNEKISFISYEKYIVGMK------ |
4 | 5cwmA | 0.11 | 0.09 | 3.16 | 0.64 | MUSTER | | --------------------------------------DPEDELKRVEKLVKEAEELLRQAKEKSEEDLEKALRTAEEAAREAKKVLEQAEKEGDPEVALRAVELVV-RVAELLLRIAKESGSERALRVAEEAARLAKRVLELAEKQGDPEVALRAVELVVRVAELLLRIAKESGS---EALERALRVAEEAARLAKRVLELAEKQGDPEVA------------RRAVELVKRVAELLERIARESGS---------EEAKERAERVREEARELQERVKELRER |
5 | 5t3eA | 0.09 | 0.07 | 2.70 | 0.69 | CNFpred | | ------LFELKAFQLQEHTYLLCFRYD-------ALLMDGASMNLVGQDLMHYYHQPDAQLPPLSFTFQDYMHIYDDMKYETAKAYWTNKLPDFP-TPNFQSLTTII-NQRRLAINLTVFNTSLILLDMDM-PFFTKVEQTQSTLLDG-GVEFIRDYTRY-VMPIVFTSMLAGAGAFAWEEGSLRHIHARTPQVYLDNVVIEKN----GELLVSWNYVEELFDAEVMESMFTQFVELLDQLVEQG-------------------------------------- |
6 | 2pffB | 0.14 | 0.12 | 4.19 | 0.96 | HHsearch-2 | | MAKRPKKSNSALFRDAEKVFTQGLNILESNTPDKDYLLSIPISCPLIGVIQLAHYVVTA------------------KLLGFTPGELRSYLKGATSQGLVTAVAIAETD-SWESF--------FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN-------EGVPSPMLSISNLTQEQVQVNKTNSHLPAGKQVENGAKNLVVSG-------PPQSLYGLNLTLRKAKAPSGLDQSRLKFSNRFLPVASPFSHLLVPASDLINKDVKNNVSFNAK |
7 | 5cwmA | 0.12 | 0.10 | 3.36 | 0.72 | Neff-PPAS | | --------------------------------------PEDELKRVEKLVKEAEELLRQAKEKGSEEDLEKALRTAEEAAREAKKVLEQAEKEGDPEVALRAVELVVRVAELLLRIAKESGSELERALRVAEEAARLAKRVLELAEKQGDPEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELAEKQGD-------------PEVARRAVELVKRVAELLERIARESG---------SEEAKERAERVREEARELQERVKELRER |
8 | 3eycA | 0.17 | 0.08 | 2.79 | 0.30 | HHsearch | | --------------------------------------------------------------VSGTWY----------LKAMTVDR--EFPEMNLESVTPMTLTTLE-G-GNLEAKVTLISGRCQEVKAVLEKT-----------DEPG----------------KYTA-DG--GKHVAYIIRSH------V-KDHYIFYSEGELHGKP-VRGVKLVGRDPKNNLEALEDFEKAAGA------RGLSTESIL---IPRQSE------TCSP------------ |
9 | 5cwmA | 0.11 | 0.09 | 3.17 | 0.56 | SP3 | | --------------------------------------DPEDELKRVEKLVKEAEELLRQAKEKGEEDLEKALRTAEEAAREAKKVLEQAEKEGDPEVALRAVELVVRVAELLLRIAKESGSEEAALRVAEEAARLAKRVLELAEKQGDPEVALRAVELVVRVAELLLRIAKESGS--------EEALERALRVAEEAA------RLAKRVLELAEKQGDPEVARRAVELVKRVAELLERIARESGS---------EEAKERAERVREEARELQERVKELRER |
10 | 4iikA | 0.12 | 0.10 | 3.65 | 0.84 | PROSPECTOR2 | | MRSIITQICNGVLHGQSEIFASSLFVHLNEQGKEIGYTKFSFIDNYVLPLIDNFSLDLTRYPDSKKVTESLIHTIYSLRSKHAPLAE-----------FTMSLCVTYQKDEQLFCAGFGIGDTGIAIKRNEGTIEQLVHTEVDGFKDAFDNYSSANIDLVIERNSVFNTKVMPGDELVGYTYVPPM---------LEMTEKEFEVEKRIVRHLNLDPGNFDDKDPLFSQLLQVVKSKQKQLVEQAGDDFTVGRLVIPD--------QLLINQLRIHAL----S |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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