>PF15887 (250 residues) IARWQSLERAKHRLVFSLLQLGLPVVSKTENEETGLAFDFLADEQKPEGEKVLTGHDNGL ITINIKEADDVEREMARKNMHEVYRTLLGHFRHEVGHYYWDRLIADSPHLAEYRRLFGDE RADYAQALQRHYDQGAPADWQEHFISAYATMHSWEDWAETWAHYLHIIDTLQTASAFGIR VQPRVGEEADNLTVAVTQDPYQTEGFEDIIEQWTPLALALNSLNRSMGLKDLYPFVIPPA VVEKLAFIHT |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | IARWQSLERAKHRLVFSLLQLGLPVVSKTENEETGLAFDFLADEQKPEGEKVLTGHDNGLITINIKEADDVEREMARKNMHEVYRTLLGHFRHEVGHYYWDRLIADSPHLAEYRRLFGDERADYAQALQRHYDQGAPADWQEHFISAYATMHSWEDWAETWAHYLHIIDTLQTASAFGIRVQPRVGEEADNLTVAVTQDPYQTEGFEDIIEQWTPLALALNSLNRSMGLKDLYPFVIPPAVVEKLAFIHT | |||||||||||||||||||
1 | 5a0pA2 | 0.17 | 0.06 | 1.97 | 1.22 | HHsearch-2 | --------------------------------------------------------------------------------SNKGKDAINLELHETAHAIDHIVLNDISKSAQFKQIFAKEG-----------R--------SLGNVNYLGVYPEEFFAESFAYYYLNQDKLKS----------------------------ACPQTYSFLQNLAK----------------------------------- | |||||||||||||
2 | 5a0pA2 | 0.18 | 0.06 | 2.09 | 1.61 | HHsearch | --------------------------------------------------------------------------SNKGKGHDAINL----ELHETAHAIDHIVLNDISKSAQFKQIFAKEG-----------RS--------LGNVNYLGVYPEEFFAESFAYYYLNQSKLKSA----------------------------CPQTYSFLQNLAK----------------------------------- | |||||||||||||
3 | 5wtjA | 0.12 | 0.08 | 2.85 | 0.70 | SPARKS-K | DINWKLAARFERYIVNGLRELGI-IKLSGYNTGISRAYP-----KRNGSDGFYTTTA----YYKFFEESYKKFEKICYGFGIDLSEINKSIRNYISHFY---IVRNP---------FADYS--IAEQIDRVSNLSYSTRYNNS----------------------TYASVFEVFKDVNLDFKLIGNNDKPKKVSVLELESYNSDYIKNLIIELLTKIE-------------------------------- | |||||||||||||
4 | 6fpcA | 0.15 | 0.09 | 3.11 | 0.63 | FFAS-3D | -AMKQRLEKIPTSILDALYSKGVKIKLTQGAITNEPELAYLKGVVPRGWEGTVPGVSERVVAVRIGYSEK-------GKGHNSLNLEI----HETLHAVDRLVLNEVSGTDEFINI-------FNKEASVKYKGDG-----------YVSAYPTEYFAEAASLYLYSDATRSDLKDS-------------------------MPLTYEFMAK-------------------------------------- | |||||||||||||
5 | 4l7aA | 0.13 | 0.10 | 3.48 | 0.72 | HHpred | ------------KLAKIVKHCWLEAYDEFTRACAPKVIHLIGSASWD-KGTYTLGTAEGGLKVTLY-GNWLDLTNV-DR-NEY---YFKV-HHEFAHILHQKKNYPV----DYDKISAG---NYTP--TGWQNRKLAEVAPLGFVTPYAGSKPSEDIAEVTACFLTYPEAQWEN--V-T-LAGEKGKPDQKLAV-KKYKDSWQVDLDLLRKVIA---RRTNEIS-ELDLDHIY----------------- | |||||||||||||
6 | 4l7aA | 0.14 | 0.11 | 3.69 | 0.62 | MUSTER | WLSVKLAKIVKHCWLEAYDEVG----GLD---ACAPKVIHLIGSASWDKGTYTLGTAEGGLKVTLYWLDLTNVDRNEY----YFKV---------HHEFAHILHQKKNYPVDYDKI-GNTPTGWQNRLAEVAPLG--------FVTPYAGSKPSEDIAEVTACFLTYEAQWENVTLAG-------EKGKPIIDQKLAVKKYKDSDLDLLRKVIARRTNEISELD----LDHIY----------------- | |||||||||||||
7 | 4l7aA | 0.13 | 0.10 | 3.58 | 0.83 | CNFpred | WLSVKLAKIVKHCWLEAYDEVG----GLDFTRACAPKVIHLIGSASWDKGTYTLGTAGLKVTLYMGNWLDL----------TNVDRMNEYYFKVMHHEFAHILHQKKNYPVDYDKISA-QNRKLAEVAP------------LGFVTPYAGSKPSEDIAEVTACFLTYPQWENVMTLAGE-------------------------KGKPIIDQKLAMVKKYMKDSWQVDL-----DLLRKVIARRTNEISE | |||||||||||||
8 | 6fpcA | 0.15 | 0.09 | 3.11 | 1.06 | HHsearch-2 | AAMKQRLEKIPTSILDALYSKGVKIKLTQGAITNEPELAYLKGVVPGDDVPGVSE---RVVAVRIGYSE----------KGKGHN-SLNLEIHETLHAVDRLVLNEVSGTDEFINIFNKEAS-------VKY--------KG---DGYVSAYPTEYFAEAASLYLYSDATRSDLKD-------------------------SMPLTYEFMAKLF------------------------------------ | |||||||||||||
9 | 5ue0A | 0.12 | 0.11 | 3.97 | 0.68 | Neff-PPAS | --TAKELQAMEAQLTAMSDQLV---GADGELPAEIQAIKDALAQALKQADGLATAMGQVAFAAAVGGGSAGTAGTVQMNV-QLYKTAFS---STSSSSYAAALSDGYSAY-TLNSLYSESRSGVQSAISQTANPALSRSVSRSADASQRAAETIVRDSQTLGDVYSRLQVLDSLMSTIVSNPQANQEEIMQLTASISKAPQ---SVDSLQKFAAQLEREFVDGERSLAESQENAFAFIQQVLVNIASLFS | |||||||||||||
10 | 6fpcA | 0.13 | 0.08 | 2.77 | 1.56 | HHsearch | SGE-YNHSEAATSILDALYSKGVKIKLTQGAITNEPELAYLKGVVPGDDVPGVSER---VVAVRIGYSE----------KGKGHN-SLNLEIHETLHAVDRLVLNEVSGTDEFINIFNKEAS-------VKY--------KG---DGYVSAYPTEYFAEAASLYLYSDSDLKDS----------------------------MPLTYEFMAKLF------------------------------------ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |