Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | SRGEAAGVDRGKAGLGLGGRPPPQPSRDERAQQLLDAVEQRQRQLLDTIAACEEMLRQLGRRRPEPAGGGNVSSKPGAPPQPAVCARGGFPKDAGDGAAEP |
1 | 1cxzB | 0.10 | 0.09 | 3.26 | 0.68 | SPARKS-K | | --------WSLLEQLGLAGADLAAPGVQQQLELERERLRREIRKELKLKEGAENLRRATTDLGRSLGPVELLLRGSSRRLDLLHQQLQELHAHV------- |
2 | 5xtcp | 0.14 | 0.11 | 3.73 | 0.52 | FFAS-3D | | ---QPYIFPDSPGGTSYERYDCYKVPHPSEKAMYPDYFAKREQWKKLRRESWEREVKQLQEETP--------PGGPLTEALPPARKEGDLP---------- |
3 | 1vgmA | 0.16 | 0.13 | 4.29 | 0.26 | HHpred | | -----EKIIKGSRLMGFGHRVY--KTYDPRAKIFKTLAKSFVKKYYEIAERIEKLGVDTFSKHIYPNTDFYS---------GIVFYALGFPIYMFTSL--- |
4 | 1jvrA | 0.15 | 0.15 | 5.01 | 0.80 | MUSTER | | HGLSPTPIPKAPRGLSTRLQPGPSDFDFQQLRRFLKLALKTPYSLLASLIRVVEIINILVKNQVSPSAPAAPVPTPICPTTPPPPPPPSPEAHVPPPYVEP |
5 | 3pdyA | 0.19 | 0.07 | 2.23 | 0.37 | CNFpred | | ------------------------PATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESLH----------------------------------------- |
6 | 2wetB | 0.17 | 0.10 | 3.27 | 0.43 | HHsearch-2 | | PYYHGFETYSITMNLGLGIVPERPRPAPAPALAEFERLRREGDELIAALPSCYEYLASIQ----------------------------------------- |
7 | 6ahfC1 | 0.16 | 0.16 | 5.24 | 0.70 | Neff-PPAS | | ----KKVVNRNLVRIPQQQPAPAEITPSYALGKVLQDAAKIQKQQKDSFIAQDHILFALFNDSSIQQIFKEAQVDIEAIKQQALELRGNTRIDSRGADTNT |
8 | 3euhB2 | 0.18 | 0.16 | 5.16 | 0.64 | HHsearch | | VAGELKRADAAE----EGGDEFVYAPLKYSVAEIFDSIDLTQRLMLAAISSCELLLSETSGTLRELQAGDKLQAATMTHDDLFVDR-------LVFDLQS- |
9 | 2n5dA | 0.28 | 0.21 | 6.36 | 0.55 | SP3 | | ---------------GPGSYTGAGEPSQADLDALLSAVRDNR-------LSIEQAVTLLTPRRGGGSGGGSMDAKEGGLDRAAAQAAGRTPA----AAPRP |
10 | 1jvr | 0.13 | 0.13 | 4.48 | 0.64 | PROSPECTOR2 | | HMGQIHGLSPTPIPKAPRGQPGPSDFDFQQLRRFLKLALKTPIRVVEIINILVKNQVSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPYVEPTTTQCF |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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