Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | MSEKLRRCRKELTAAIDRAFEGVSYSQECTGQQRLELSAAPLSFSLPVHRLLCRRHPLAACSSAAPFAAVPCAPENENPAFATNHAPVNAKPHALCPERKPLTSKENVLMHSSILAPERESWRTAGEGENWRKENLRKDMERDLKADSNMPLNNSSQEVTKDLLDMIDHTSIRTIEELAGKIEFENELNHMCGHCQDSPFKEEAWALLMDKSPQKATDADPGSLKQAFDDHNIVETVLDLEEDYNVMTSFKYQI |
1 | 5yz0C | 0.09 | 0.09 | 3.31 | 0.78 | SPARKS-K | | PPSKRARGFSAAADPDDPFFTADDLEELDTLASQALSQCPAAARDVSSDHKVHRLDGMSKNPSGKNRETVPI---KDNFELEVLQAQYKELKEKMKVMEEEVLIKEIKILRDSLHQTESVLEEQRRSHFLLEKTQALSDKEKEFSKKL-QSLQSELQFKDAEMNELRTKLQTSERANKLAAPSVSHVSPRKNPSPEACSPQFGKTSFPTKESFSANMSLPHPCQTESGYK---PLVGREDSKPHSLRGDSIKQE |
2 | 6h3pA | 0.15 | 0.13 | 4.25 | 0.61 | FFAS-3D | | ---SLAAVRDALVRLEDSVVFAIERARHPRNAPAYAPAATAGEHSLVEFFVREAEALNAKAGHYQKPEDVPFFPQD----LPSPLFPTKPSPKVLHPFASLVTVNDAIWMYFDELLP---LFTVDGDDASYAQACLQVLSQREVK----------FKDAPQEYSRLIKEKDSNSLMDMLTFKAVEEKKKRV---------EKKARTFGQNVTLDDNATAGDSECKVDPKDQWVMPLTKDVEVEY---------- |
3 | 5kszA2 | 0.16 | 0.07 | 2.22 | 0.33 | HHpred | | -----------------------------------------------------------------------------------------------------------EYLFPLLKIP----------------------------PDCTTELNHHAYLFLQSTFDKHDLDR-------DCALSPD-ELKDLFKVFPYIPWGPDVNNT-VC------TNERGWITYQGFLSQWTLTTYLDVQRCLEYLGYLGYSI |
4 | 5cwpA | 0.12 | 0.11 | 3.87 | 0.74 | MUSTER | | MSSDEEEARELIERAKEAAERAQEAAERTGDPRVRELARELKRLAQEAAEEVKRDPSSSDVNEALKLIVEAIEAAVRALEAAERTGDPEVRELARELVRLAVEAAEEVQRNPS----SSDVNEAL---------KLIVEAIEAAVRALEAAERTGDPEVRELARELV-RLAVEAAEEVQRNPS-SEEVNEALKKIVKA-IQEAVESLREAE---ESGDPE--------KREKARERVREAVERAEEVQRDPSGW |
5 | 1u6gA | 0.18 | 0.07 | 2.17 | 0.57 | CNFpred | | ------------------------------------------------------------------------------------------------------------------------------------QDELARKCEQVLIE-------KHLEIFHTEFQNLLD-EDLGRMYNLVSRIDGLGELKKLLET----HIHNQGLAAIEKCGEAALN-----------DPKMYVQTVLDVHKKYNALV------ |
6 | 2pffB | 0.18 | 0.15 | 4.87 | 0.58 | HHsearch-2 | | MDGSLEHVLLVPTPAEGKFLGYVSSLVEPSKVG--------------------------------QFDQNLCLTEFENCYLEGNLQENDTTLTARIMAKRPFDKKSNSALFRDYFEELSELIRTTLDAEKVFTENPSNTPDKDYLLS--IPISCAHYVVTAKLLSYLKHQGLVTAVAIAETDSWESFFVSVRKRCYE--------AYPNTSLPPSILEVPSPMLSISNLTQEQVQDYVNKTNSHLPAKQVEISL |
7 | 2tmaA | 0.09 | 0.09 | 3.42 | 1.11 | Neff-PPAS | | --EQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIA----EDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAI |
8 | 2m7bA | 0.21 | 0.03 | 0.88 | 0.43 | HHsearch | | AREKFEKDVEELVKKVVAVCEE-LGAEECFSCDFD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
9 | 2vg4A | 0.11 | 0.08 | 3.00 | 0.88 | SP3 | | ---------------------------------------FPQLPPAP------DDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRIPADRLP----NHVAI---VMDGNGRWATQRGEGHKMGEAVVIDIACGAIELAFSTENWKRSPEEVRFLMGFN----RDVVRRRRDTLKKLGVRIRWVGSRPRLW--RSVINEL-AVAEEMTKSNDVITINYCVNRTEITEATREIAREVAAGRLNPERI |
10 | 5gaoE | 0.12 | 0.11 | 4.07 | 0.91 | PROSPECTOR2 | | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTKEAYKKLSQKFHGTKS--NKK |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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