Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220
| | | | | | | | | | | |
| Seq | MDTILVFSLIIMSYDVSKKELRDSNCHVEQLPRLFPKDVRRIRDVLMQEAQAEAKRSTFIQNQTVATLQCLGSRSKVKVNLVYSEKRSKTKHTLKNLRITAAPSRNSTDSPNCHLTPTSKFQTGFLLTGKAFLPGISQCKVYAVRKAASETFPTTTTSITPGEKGGEKTTSTDDFSSTPLLLDTDENLKKRQKWSIVVKFLIAVTLLLSGVTIIVFVIFEVPCL |
1 | 5aftV | 0.08 | 0.05 | 2.14 | 0.78 | SPARKS-K | | ------------------------------------------------SGNKVSRQSVLCGSQNI----VLNGKTIIMNDCIIRGDLANVRVVKSRSVIRPPFKKFSKAFFPLHIGDHVFIEEDCVVNAAQIGSYVKNCVIGRRCVLKDCCKILDNTVLPPETVVPPFTVFSGCPGLFSGELPECTQELMIDVTKSYYQKFLPLTQV----------------- |
2 | 2cskA | 0.07 | 0.04 | 1.49 | 0.40 | FFAS-3D | | -----------------------------------------------------------------------SNFLEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKE----SCVRRRY--------SDFE-------------WLKNELERDSKIVVPPLPGKALKRQ---LPFRGDEGIFEESFIEERRQGLFINKIAGHPLAQNERCLHMFL------- |
3 | 5ujzG | 0.10 | 0.06 | 2.31 | 0.29 | HHpred | | ----TDFTLTI--SRLEPEDFAVYYCQQYGISPVIT-FGGGTNVEIKGVQLVE-SGGGLVQPGGSLRLSCAASGFTFDMHWVR-Q-APGKG--LEWVSGLT-TGGSGSVRGRFSISRENA-KNSLYLQMNAGDTAAYFCVRGVREVGYAMAVW----------------------------------------------------------------------- |
4 | 4q7qA | 0.12 | 0.11 | 3.80 | 0.59 | MUSTER | | ELTWVAISITYLNDHLDETGNRVSKGYLTRLNEILPNKYWTSGGIAGN-------DSLGLIKADVYSVFLWWQGRPVGKLDDYQHDNG-NTTVYGSFRIIIS-QLNPEAQRNDFVYIADAKNNAFGSYQKKNGQTLEEIPVVDLYHHPLLTLRNVKFKHLKNPKNGKYVNYKYPFNPENNEYPYPPAAVNLDKGNAIIASALADVFRQLGLS------------ |
5 | 3imlA | 0.11 | 0.08 | 3.08 | 0.47 | CNFpred | | GDQGLMFGYACDE-----------------TPELMPL-PIHLSHRLVERQANLRRDGRLP------WLRPDA---KSQVTVRYVD---GKPHSIDTVVLSTQH-----------APEIDLPALREAVIEEVIKPTLP-IKFLVNPGRFVIGGPQGDCGLTGRK----IVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIG |
6 | 2pffB | 0.18 | 0.17 | 5.54 | 0.64 | HHsearch-2 | | MDAYSPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPDDEPTTPAELVGYVSSLVEDVLNL---CLTEFENC---YLEGNDIVKTKELIKNYITARIMAKRPFDKKSNSALGEGNAQLVAIFGGQYFEELRDQTYHVDLIKFSAETLSELIRTTLDAE--KVFTQGLEWLENP--SNTPDKDYLLPVKWETTTQFKATHILDFGGVRVIVAGTLDINPD |
7 | 5tgzA | 0.06 | 0.06 | 2.51 | 0.78 | Neff-PPAS | | GVVSVLLLFIVYAYMYILWKAHSHAVAKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSWEY------------FCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVRGAIPDQARMDIELAKTLVLILVVLIICWGPLLAIMVYDVFGK |
8 | 1zlvM | 0.12 | 0.07 | 2.34 | 0.30 | HHsearch | | KGRFTFVYLQM--HKMRVEDTAIYYCARKGSDRAWGPGT-VVTVSPKGPSVFP--LAPS-TSGGTAALGCLVKDFPVTVS---WNLTSGVLYSLSSVVTVPSSSLGT---------------------------QTYICNVNHKPSNTKV-----DKKVEP--------------------------------------------------------------- |
9 | 6etxG | 0.08 | 0.08 | 3.14 | 0.57 | SP3 | | VFNHSRDRWLRVLSPFAPDYIQRSLFHRKGINEESCFSFLRFIDISPAEMANLMLQGLLARWLALFL----SLKASYRLHQLRSWGAPEGESHQRYLRNKDFLLGVNFPLSFPNLCSCPLLKSLVFSSHCKAVSGYSD---QVVHQRRSATSSLRRCLLTELPSFLCVASPRVTAVPLDSYCNDRSAEYERRVLKEGGSLAAKQCLLNGAPELAADWLNRRSQF |
10 | 5oacA | 0.08 | 0.08 | 3.00 | 0.69 | PROSPECTOR2 | | MTTVSGIDVCFTLIGVDDDSFASGSKNDYISDTPFSENLALLAKYSTITQGRDQWEEGVKLAAKEMVHLVLKDNDVLEVYVNVVRGAYGAELDANACICDVRTSPSIGVEKFIPFMTSYSIRANQATDLVNLGNDVTRIALLSMTNDVSNIPNAFTDSKCIEDSVRSHANEVDKMNPAKIRENTITSLEILQKAVAMEEKHQSADIA------------KVPAT |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|