Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | QHSKPCVGRGRVCYAKFINTNARTCNEPVPYIDPKKGPEEQGDWWSHGKGLEHPFQPPYDTKSTQRSDFQKPTCPLVLPVKHSKLQKPSCGIVPLASPDASAELQKNFIERISFIHQYDARKTPNEPIRGKRHGVFVQTEIKPGSRPIVPKGTEVFLNAPGSCWSEQSEKTEKGNSAESKMISPSLCRQNSLELLETKTHLSETDVREAAKACPRSPETREKTADVFQTAAVNALLTRHDPLNPPIK |
1 | 1dgiR | 0.07 | 0.07 | 2.96 | 1.66 | Neff-PPAS | | --QVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTF-PQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPIN |
2 | 4k0mC | 0.06 | 0.05 | 2.08 | 1.13 | PROSPECTOR2 | | KVYTIDEAARTAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQAAAAAAAAAAAAAAAAAAAAAAA-----------------AAAAAAAAAAAA-----------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-----------------------------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
3 | 5a9qA | 0.09 | 0.08 | 2.94 | 0.94 | SPARKS-K | | IAVIENSESLDCQLLAVTHAGVR------LYFSTCPFRARPNTRLPPGFSASSTVEKPSKVHRALYSK------GILLMAASENDNDILWCVNHDTFP-----FQKPMMETQMTAHSWALSAIDTPLNKDHIPITDSPVVV---QQHMLPPKKFVLLSAQGSLMFHKL----------RPVDQLRHLLVEIERFFKLHQEDQACATCLILACSTCDRE----VSAWATRAFFRYGGEAQMRFTTLPV |
4 | 1j5aK | 0.07 | 0.05 | 1.96 | 0.43 | FFAS-3D | | -----------------------------------------------------------------------------AQINVIGQNGGRTIELPLPEVNS-----GVLHEVVTWQLASRRRGTASTRTRAQVSK----TGRKMYGQKNARHGDRSVPTFVGGGVAFGPKPRSYDYTLPRQVRQLGLAMAIASRQEGDGFDIADAKTKNFISWAKQNGLDGTEKVLLVTDDENTRRAARNVSWVSVLP |
5 | 1dlqA | 0.13 | 0.11 | 3.65 | 0.35 | HHpred | | -------------------HYLDMRMDAEDENATPRTI--EGPLYVAGAPESV-----GYARMDDGSDPNGHTLILHGTIF-----DADGKPLP-----------NAKVEKGFYSHFDPTGEQQAFNMRRSINGQYRVRTILPAGYGCPPEGPQQLLNQLGRHGNRPAHFSADGH---RKLT-TQINVAGD-PYTYDDFAYATREG-LVVDAVEHTDPKANDVEGPFAEMVFDLKLTRVDGVDQVVD |
6 | 1kanA | 0.11 | 0.10 | 3.48 | 0.75 | MUSTER | | NGPIIMTREERM---KIVHEIKE-------RILDKYGDDVKA--LGRQTDGPY-------------SDMSTEEAEFSHEWTTGE-WKVEVNFYSE------EILLDYASQVESDWPLTHGQFFSILPIYDS-GGYL--EKVYQTAKSVEAQKHDAICALIVEELFEYAGKWRNIRVQGPTTFLPSLTVQVAMAGAMLRICYTTSSVLTEAVKQSDLPSGSGQLSDSEKLLEWNGIQEWTERHGYIVD |
7 | 2pffB | 0.16 | 0.15 | 4.98 | 0.83 | HHsearch-2 | | LNILEWLENPSNTPDKLIPISLIGVIQLAHYVVTAKLLAETDSWESNTSLPNEGVPSPMNLTQEQVQDYVNKTNSPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLLRKAKAPSGL-DQSRI-PFSERKLKFSNRFLPVASPFHSHLLVPAS--D-------LINKDLVKNNVSFNAKDIQI-PVYDTFDGSDLRVLSGSISER----IVDCIIRLPVKWETTTQFKATHGVRVIVAGTLDINPDDD |
8 | 6e5p2 | 0.07 | 0.06 | 2.62 | 1.57 | Neff-PPAS | | --VESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVAS-ISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPS--------VFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTV-------------PSSSLGTQTKPSNTKVDKKVEPKS--------- |
9 | 2ky9A1 | 0.25 | 0.06 | 1.88 | 0.31 | HHsearch | | -----------------------------------------------------------------------------------------------------------------YVVSYTPT-NGGQ--RVDHHKWVIQEEIKDAGDKTLQPGDQVILEASHMKGM-------KGATA--EIDSA--------------------------------------------------------------- |
10 | 5i2aA | 0.17 | 0.10 | 3.32 | 0.61 | SP3 | | --------------------------------------------------------------------------------------------YDSTPIAKSDRIKRLVDHLYAKMPEIEAKATEGQPVKAR---AFLPIIIRPESTTIAPRGCQTYPEF-SYEWLEAEFETVETRSADPFYISEET----KKRLLAADAYWKGKTTSELATSYMAPETLRAMKHNFFTPGNYFYNGVGH--VTVQYE |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|