Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80
| | | | |
| Seq | GNEGERRAGIDPATGKQRIYPQNPVGKPKYRIPDGRNDVTKQITEVKNVNDIKSKDSKQIIDEANWAAQNGYTMTLVTDHRTVLSQDV |
1 | 1ptoF | 0.09 | 0.08 | 3.03 | 0.88 | SPARKS-K | | ----------LPTHLYKNFTVQELAGKNQEFCLTAFMSGRSLVRACLSDGHEHDTWFDTMLGFAISAYALKSRIALTVEDSLQICPLN |
2 | 2wj0A | 0.18 | 0.15 | 4.83 | 0.54 | FFAS-3D | | GTRFERDLGF-------AAIRVAGSGVSPFPCPDIVAGNGRTYIEVKMRKELPLYLSDEVEQLVTFARGFGAEAYVALKLP------- |
3 | 1t0fA | 0.14 | 0.11 | 3.90 | 0.31 | HHpred | | ----AIDSGIKHPVIGVQVMSTD----FLVDCKDG-P-FEQFAIQVKPAAALQERTLEKLELERRYWQQKQIPWFIFTDKEIN----- |
4 | 2wj0A | 0.21 | 0.19 | 6.14 | 0.62 | MUSTER | | GTRFERDL------WKAAAIRVAGSGVSPFPCPDAGNGRTYLAIEVKMRKELPLYLSDEVEQLVTFARGFGAEAYVALKPRKKWR-PV |
5 | 2wcwA | 0.15 | 0.15 | 4.99 | 0.69 | CNFpred | | GTRFERDLLVELWKAGFAAIRVAGAGVSPFPCPDIVAGNTYLAIEVKMRKELPLYLSDEVEQLVTFARGFGAEAYVALKLAWRFFPVQ |
6 | 1t0fA2 | 0.15 | 0.12 | 4.20 | 0.38 | HHsearch-2 | | TRQIAIDSGIKHP-------V--IRGVDQVMSTDFLVDCEQFAIQVKPAAALQERTLEKLELERRYWQQKQIPWFIFTDKEI------ |
7 | 2jvfA | 0.12 | 0.12 | 4.38 | 0.82 | Neff-PPAS | | HMKVDITIKIQRDGQEIEIDIRVSTGKELERALKALARAGARNVQITISAENDEQAKELLELIARLLQKLGYKDINVRVNGTEVKIEV |
8 | 1t0fA2 | 0.15 | 0.12 | 4.20 | 0.58 | HHsearch | | TRQIAIDSGIKHP-------V--IRGVDQVMSTDFLVDCEQFAIQVKPAAALQERTLEKLELERRYWQQKQIPWFIFTDKEI------ |
9 | 1gefA | 0.16 | 0.14 | 4.55 | 0.90 | SP3 | | GAQAERELGF-------AVVRSAGSKK-----VDAGNGKKYLCIEVKVTKKDHLYVGRDMGRLIEFSRRFGGIPVLAVNVGWRFIEVS |
10 | 2ehrA | 0.08 | 0.08 | 3.15 | 0.42 | PROSPECTOR2 | | GSSGSSGPNFSHWGPPRIVEIFREPNVGQTVIKRLKNGEELKGIFIKQVLEDSPAGNASHSEAVEAIKNAGNPVVFIVSLSSTPRVIP |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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