Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | PGAGREGYKRCPPSILRQSRPERRSRGAEPQKTARHVRFREPPEVAVHYIASRESTTATKALGRPRSRGGSLLLRLSVCLLLVLVLGLYCGRAERVTLALEDLRARLLVLALRLRHTAVTCWH |
1 | 5dooA2 | 0.06 | 0.05 | 2.16 | 0.77 | SPARKS-K | | ---EFDNLKDFYTTFNIRPISPENKIDLNNEQENISFYYE---------------NLPEPFISTTSAIMKAILYVYAELEQVAKEAFKKLGKYRL-QDFLATLEQHFITLIFQGYLKIFETKP |
2 | 6ncrA1 | 0.09 | 0.07 | 2.75 | 0.57 | FFAS-3D | | -----NGQGKMSKS------------------ANNAIYLSDDAKTVQEKIRKLYTDPNRIHATTPGRVEGNPLFIYHDLFVEEFKTRYRQGCIRDKARLAEEINLFLNPFREKRSELV----- |
3 | 1zrtC1 | 0.13 | 0.10 | 3.37 | 0.29 | HHpred | | ------------------------DHYEPKTGIEKWLHDRLPIVGLVYDTI--MIP----TPKNLNIWGIVLAFTLVLQIVTGIVLAMHYTPHVDVEHIMRDIHASFLAVYIHIFRGLYYG-- |
4 | 5yfpE2 | 0.11 | 0.10 | 3.49 | 0.74 | MUSTER | | --FIKNVKFKEQ---L--IDFENHSVIIETSMQN----INDVETVIKN-----ESKIVKRVEEKATHVIQLFIQRVFAQKIEPRFEVLLRNSLSISVRILHGLFTLFGKFTKSLIDYFQL--E |
5 | 3rkoC | 0.16 | 0.07 | 2.42 | 0.59 | CNFpred | | --------------------------------------------------------------------IKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILCGQLYER |
6 | 6nt5A | 0.18 | 0.09 | 2.90 | 0.42 | HHsearch-2 | | ---------------------------------------------------------SSLHPSIPCPRGHGAQKAALVLSACLV--TLWGL----RYLVLHLASLQLGLLLNGVCSLAEELRH |
7 | 5yfpE2 | 0.09 | 0.08 | 3.08 | 0.82 | Neff-PPAS | | ----FIKNVKFKEQL---IDFENHSVIIETS-------MQNLINDVETVIKNESKIVKRVFEEKATHVIQLFIQRVFAQKIEPRFEVLLRNSLSISNLAYVRILHGLFTLFGKFTKSLIDYFQ |
8 | 6fkr1y | 0.48 | 0.08 | 2.37 | 0.31 | HHsearch | | ----------------------------------RRIRFRPP------YLP---------RPGRPR---FPPP-------------------------------------------------- |
9 | 1w27A2 | 0.09 | 0.08 | 3.12 | 0.71 | SP3 | | -ENLKSTVKNTVSSVAKRVLTMGVNGELHPSRFC--------EKDLLRVVDREYIFAYIDDPCSATYPLMQKLRQTLVEHALKNGDNERNLSTQKIATFEDELKALLPKEVESARAALESGNP |
10 | 1texA | 0.15 | 0.15 | 4.95 | 0.58 | PROSPECTOR2 | | DHPTYLPNTSMSPQPREWFADEDQSILRLLDPLIEGKPDLAPATIWRDYIQTVGRTPNKDLPDRSGSGLLSAIRDVVAVSFWRAVQTRVWRRAEYHAGAIAHVITMLRAQEEGWRAWFTEEWL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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