Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | QKAVPAAHLTFVIDCASGKQLSLAAPLVPPQAPGPYLGPVTPPMKTYILFCGDSQPPLTQEAILGGGHIAQARGTLPPCSGTVAPASSSLSPLCPQGAPEAKGSPLKTMPTRYLAWETVMGLLKAFSSCVCGQAD |
1 | 5aftV | 0.10 | 0.10 | 3.53 | 0.87 | SPARKS-K | | NDCIDLANVRVGRHCVVKSRSVIRPPFKKFSKGVAFFPLHIGDH----VFIEED--CVVNAAQIGSYVHVGKNCVIGRLDNTVLPPETVVPPFTV--FSGCPGLFSGELPECTQELMIDVTKSYYQKFLPLTQV- |
2 | 1p16A1 | 0.12 | 0.10 | 3.43 | 0.43 | FFAS-3D | | --------VDFQLEFVFNEVQDPDLDERDPTSTYLDY-DAKPNLIKLRVWQGSNVHTDFAKLDLSDDDWERLKALEQPLQGRIAECRQSTTKKG---YWELRFRNDKSNGNHISVVEKILVSIK----------- |
3 | 4m9rA | 0.10 | 0.07 | 2.44 | 0.28 | HHpred | | -PRLANKPKIVFVQASRGERRDNGFPV----------RKKPSQADILIAYTTAQY--VSWRNSARGSWFIQAVC-----EVFSTHA---------------KDM------DVVELLTEVNKKVACG--------- |
4 | 2nbiA | 0.19 | 0.18 | 5.74 | 0.85 | MUSTER | | PSSQPS-ECADVIDECFLPYSDASRPPSCLSFGRPDCDVLPTPQNI-----NCPRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPE-PSSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTAV-GRPD |
5 | 4etpA | 0.17 | 0.08 | 2.69 | 0.43 | CNFpred | | -------HSIFIIHLS----GSNAKTGAHSYG-----------TLNLVDLAGSERINVSQ----------------------------------------VVGDRLR-------ETQNINKSLSALGDVIHALGQ |
6 | 5i8iA3 | 0.20 | 0.14 | 4.50 | 0.42 | HHsearch-2 | | VIAVSGGTVSCTLN---DAQIAQNEPIEVKRGDILSVGKVTVGCRAYLSIRGGIDVPESRSGNMGGGRILKLGDVLFLNQPELSVSSLP----APDFEPQA---------------------------------- |
7 | 3k1qI4 | 0.14 | 0.13 | 4.55 | 0.87 | Neff-PPAS | | --TGDGNSFTPTSDMTSTKHLDTAMTMLTPDISA---GSASCNWKSLLAFAKDILPLDNLCLTYPNEFYNVAIHRYPALKPGNPDTKLPDAQAHPSEVGKGVTDASEKLRARQSLTVAKQAFFDQIGSLWPGK-- |
8 | 4m9rA | 0.10 | 0.07 | 2.71 | 0.35 | HHsearch | | APRLANKPKIVFVQASRGERRDNGFPV----------RKKPSQADILIAYTTAQY--VSWRNSARGSWFIQAVC-----EVFSTHA---------------KDM------DVVELLTEVNKKVACGFGNILKQM- |
9 | 2nbiA2 | 0.17 | 0.12 | 3.91 | 0.68 | SP3 | | ------------------QPSSQPTGPQPSSQPSECADVLEL--------CPYDTPFDDSSRPPDCTDPSVNRDKLSTAIDFTCPTCCPTRPDNPMFSPSPDGSPPVCSPTMMPSPLPSPTE------------- |
10 | 1mv3A | 0.17 | 0.16 | 5.37 | 0.69 | PROSPECTOR2 | | DGSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVEGGSGAGRLSDWN----QHKKLEKCFTERVP |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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