Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | MPPRVQQDTSLAIDLGQKGQGYGEINNAIDASHLGPSWGTEYKVKTNGKIEVSGGIGPALKGEMKVNNDYFSVSTGYTKEFGAKAGASIGIDFGPYDFGVFGDLNRDYSTSIGYGPGSVGLSVGQDGLGFSFSVGSSIDFTGSSTVPHSEKIEMNGDTTKEIYHYDFK |
1 | 2fkjA1 | 0.11 | 0.10 | 3.62 | 0.90 | SPARKS-K | | -----------------NSVSVDLPGEMKVLVSKEKNKDGKYDLIATVKGTSDKNNG-SGVLEGVKADKKLTISGQTTLEVFKEDGKTLKVTSSSTEEKFNEKGELSEKKITRADKSSTEEKFNEKGELSEKKIKSSTEEKFNEKGELSEKKITRADKSSTEEKFNEK |
2 | 6f1tg1 | 0.13 | 0.12 | 4.15 | 0.40 | FFAS-3D | | ----LTEEEKQQILHSEEFLSFFDHSTRIVERALSESLNRQFFDERWSKHRGIHCHAASHLFVTSSFDWTVKLNNKPLYSFEDNAGYVYDVMWSPTHPALFACVDGMGRLDL------WNLNNDTEVPTASISVEGNPALNRVRWTHSGREI-AVGDSEGQIVIYDVG |
3 | 4gjiA2 | 0.18 | 0.11 | 3.49 | 0.31 | HHpred | | --SALKEDYALGANLARRGVDIEAVTAKVEKFFVVPSWGVGTG-------GTRFARFPTGEPR-GI-FDKIQQLTRATPNVSLN------------IPWDKA----DPK----EL-KA---RGDALGLGFDHNVT--------------------------------- |
4 | 5ny0A2 | 0.11 | 0.10 | 3.68 | 0.75 | MUSTER | | VSNEIADNANIALENSAT-----KIDIWMIADIGIHPHTTALTIGNNATLTMENGNNSALNIKLDGDTSSFTVGEGSTVKLSAKVSNTANVSFAKGSDVTLHAGTGSNLRMGASISNQIDFN---GKATFIKDSEFDYYWNDQQKTGSTGVANFNPGSNVLFQAGPGA |
5 | 2xr1A | 0.06 | 0.02 | 0.80 | 0.64 | CNFpred | | ---------------------SGMVAKTLKHTIPLDY-EEVTDIAPDIKLTFHNAGLGSAISHFHIGDGLHNVVF--------------------------------------------------------------------------------------------- |
6 | 2ndaA | 0.18 | 0.09 | 2.91 | 0.47 | HHsearch-2 | | SASRVAYDSNNSAWDFADGVLEQILATSRSRGYITG---DQYILER-VNIVNGNGYYNLYKPDG---TYLFTLNTGYFVGNGAGHA--DDLDY--------------------------------------------------------------------------- |
7 | 5ny0A2 | 0.12 | 0.11 | 3.99 | 0.91 | Neff-PPAS | | --SATKIDIWMIADIGHPHTTALTIGNNATLTMENGNNSA-LNIKLDGDTSNSFTVGEGSTVKLSAKVDNVRILDSNTANVSFAKGSDVTLHAGTGSNLRMGASI--SNQIDFNGKATFIKDSEFDYYWNDQQKTGS---TGVANFNPGSNVLFQAGPGASNVNTY-- |
8 | 5aonE | 0.28 | 0.05 | 1.64 | 0.56 | HHsearch | | LDSRVR-RTPTSHFLKSKGLSAEEICEAFTKVG--------------------------------------------------------------------------------------------------------------------------------------- |
9 | 5ny0A2 | 0.13 | 0.12 | 4.15 | 0.57 | SP3 | | NEINIADNANIALENSAT-----KIDIWMIADIGIHPHTTALTIGNNATLTMENGNNSALNIKLDGDTSSFTVGEGSTVKLSYEDSNTANVSFAK---GSDVTLHAGTGSNLRMGASISNQIDFNGKATFIKDSEFDYYWNDQQKTGSTGVANFNGPGASNVNTY--- |
10 | 4aq1A2 | 0.12 | 0.11 | 4.03 | 0.69 | PROSPECTOR2 | | SVPASATVATSPVTVKLNSSDNDLTFEELIFGVIDPTQ----LVKDEDINEFIAVSKAAKNDGYLYNKPLVTVKDASGEVIPTGANVYGLNHDATNGNIWFDEEQAGLAKKFSDVHFDVDFSLANVVKTGSGTVSSSPSLSDAIQLTNSGDIYVKGADKDNVTVTKGS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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