Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| Seq | CVQWKNAYALCWLDCILSALVHSEELKNTVTGLCSKEESIFWRLLTKYNQANTLLYTNQLSGVKDGDCKKLTSEIFAEIETCLNKVRDEIFISLQPQLRCTLGDMESPVFAFPLLLKLEPHIEKLFLYSFSWDFECSQCGHQYQNRHMKSLVTFTNVIPEWHPLNAAHFGPCNNCNSKSQIRKMVLEKVSPIFMLHFVEGLPQNDLQHYAFHFEGCLYQITSVIQYQANNHFITWILDADGSWLECDDLKGPCSERHKKFEVPASEIHIVIWE |
1 | 6dgfA | 0.15 | 0.14 | 4.81 | 3.17 | SPARKS-K | | LAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRDNAHTALVEEFAKLIQTIWTS----SPNDVVSPSAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVDHLPD-DEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVTLMDCMRLFTKE----DVLDGDEKPTCCRCRGRKCIKKFSIQRFPKILVLHLKRIRTSKLTTFVNFPTNHAVYNLYAVSNHSGTGHYTAYCRSPGTGWHTFNDSSVTPMS---SSQVRTSDAYLLFYE |
2 | 3i3tC | 0.15 | 0.14 | 4.84 | 2.59 | FFAS-3D | | -VGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEV-QELTEAFADVIGALWHPDSCEAVNPTRFRAVFQKYVPSFQQDAQEFLKLLMERLHLEINRRLSDDDRNLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVASSPVYQLYALCNHSGYGHYTALCRC-QTGWHVYNDSRVSPVSENQ---VASSEGYVLFYQ |
3 | 2ibiA | 0.17 | 0.16 | 5.33 | 5.01 | HHpred | | LAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKNPEHLPQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSEVTLMDCMRLFTKE----DVLDGDAAPTCCRCRGRKCIKKFSIQRFPKILVLHFSESRRTSKLTFVNFPNTHAVYNLYAVSNHSGMGHYTAYCRSPTGEWHTFNDSSVTPMS---SSQVRTSDAYLLFYE |
4 | 3i3tC | 0.16 | 0.15 | 5.02 | 2.69 | MUSTER | | HVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEV--QELTEAFADVIGALWHPDSCEAVNPTVPSFSGYSQQDAQEFLKLLMERLHLEIN---RRLSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFGKVSLRDCFNLFTKEEELESENAPVCDRCRQKRSTKKLTVQRFPRILVLHLNRFSASRGSVGVDFPLQRPVYQLYALCNHSGSGHYTALCRCQTG-WHVYNDSRVSPVSENQ---VASSEGYVLFYQ |
5 | 5txkA | 0.13 | 0.12 | 4.29 | 2.29 | CNFpred | | KIGLINLGNTSYVNSILQALFMASDFRHCVLRLTNNSQPLMTKLQWLFGFLEHSQRPAISPFLSASWTPWFSPGTQQDCSEYLKYLLDRLHEEEKTGTRICQKLK------------SSTSVEKMFGGKIVTRICCLCCLNVSS-SVLDLVNYFLS----PEKLTAENRYYCESCASLQAEKVVELSQGPCYLILTLLRFSFD-IPLLLRLPLRGQAYDLCSVVVHSGSGHYYCYARE-ENQWYLFNDTRVSFSSFESVSNVPKDTAYVLFYR |
6 | 5jtvA | 0.15 | 0.14 | 4.55 | 1.24 | HHsearch-2 | | YVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTSSKSVPLALQRVFYELQHS------DKPVGTKLTTLDSFMQHDVQELCRVLLDNVENKMKGT-------------------CVEGTIPKLFRGKMVSYIQCKEVDYRSKKNIFESFVDYVAV----EQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQFMYDPQTDINDRFEFPKDPANYILHAVLVHSGHGHYVVYLNPKDGKWCKFDDDVVSRCTKEEAIERHCTNAYMLVYI |
7 | 3i3tC | 0.14 | 0.14 | 4.63 | 3.72 | Neff-PPAS | | -VGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEV--QELTEAFADVIGALWHPDSCEAVNAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGSSPVYQLYALCNHSGYGHYTALCRC-QTGWHVYNDSRVSPVSENQVASS---EGYVLFYQ |
8 | 5cvmA | 0.19 | 0.17 | 5.55 | 1.86 | HHsearch | | YFGLVNFGNTCYCNSVLQALYFCRPFRENVLAYQKKKENLLTCLADLFHSIATQ---KKKVGVIPPKLDLFDNYMQQDAHEFLNYLLNTIADILQEEKK-----------------QELTWVHEIFQGTLTNETRCLNCETVSNTSITHCLRDFSNT----ETLCSEQKYYCETCCSKQAQKRMRVKKLPMILALHFKYMEQTKLSYRVVFPNLDRMYDLVAVVVHCGNGHYITIVKSHG-FWLLFDDDIVEKIDAQAIEEFNSESGYILFY- |
9 | 2hd5A | 0.15 | 0.15 | 4.91 | 3.22 | PROSPECTOR2 | | LAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRSNAHTALVEEFAKLIQTIW----TSSPNDVVSPSAPRFVGYNQQDAQEFLRFLLDGLHNEVNR--VHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSAVTLMDCMRLFTKE----DVLDGDEKPTCCRCRGRKCIKKFSIQRFPKILVLHLKRIRTSKLTTFVNFPTNHAVYNLYAVSNHSMGGHYTAYCRPGTGEWHTFNDSSVTPMSSS---QVRTSDAYLLFYE |
10 | 5jtvA | 0.15 | 0.14 | 4.53 | 3.21 | SAM | | -VGLKNQGATCYMNSLLQTLFFTNQLRKAVYMGDDSSKSVPLALQRVFYELQHS------DKPVGTK---LDSFMQHDVQELCRVLLDNVENKMKG-------------------TCVEGTIPKLFRGKMVSYIQCKEVDYRSKKNIFESFVDYVAV----EQLDGDNKYDAGEHG-LQAEKGVKFLTLPPVLHLQFMYDPQTDQNIKINFPKDPANYILHAVLVHSGHGHYVVYLNPKDGKWCKFDDDVVSRCTKEEAIERHCTNAYMLVYI |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|