>PF15383 (245 residues) LPDELDVEEDDIITDTPPPIPQHSLFSAPQGQSQPVGKVFVERNKRFQAAERSDWRKTSD QMDNMTDFQHIQPLWTTRDVSVRVHEGFRVFGLYCHGFLAGYAVWNVVVVYMLAGQHLTA LSNLLQQYHGLAYPSQSLLYMLLAISTVAAFDRVNLAKGSVALREFITLDPVALASFLYF SALVLSLSQQMTSDRINLYPSSNTTLWPPGSEHQILHPWVTINLVVALLVGLAWIFIATR PETDY |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | LPDELDVEEDDIITDTPPPIPQHSLFSAPQGQSQPVGKVFVERNKRFQAAERSDWRKTSDQMDNMTDFQHIQPLWTTRDVSVRVHEGFRVFGLYCHGFLAGYAVWNVVVVYMLAGQHLTALSNLLQQYHGLAYPSQSLLYMLLAISTVAAFDRVNLAKGSVALREFITLDPVALASFLYFSALVLSLSQQMTSDRINLYPSSNTTLWPPGSEHQILHPWVTINLVVALLVGLAWIFIATRPETDY | |||||||||||||||||||
1 | 6ajfA3 | 0.09 | 0.08 | 3.10 | 0.90 | SPARKS-K | MRAKALTVSG-FTDPDNDPEKMWKERPANDSGSKDPSVRVIQNG----LENRNDAAKKIDELRALQPPHGIEVFVGGTPALEQDSIHSLFDKLPLMALILIVTTTVLMFLAFG---------------SVVLPIKAALMSALTLGSTMGILTWMFVDGHGSGLMNYTPQPPMIGLIIAVIWGLSTDYEVFLVSRMVEARERG-----MSTAERIGTATTGRLITGAALILAVVAGAFVFSDLVMM | |||||||||||||
2 | 5tjvA1 | 0.16 | 0.11 | 3.68 | 0.86 | FFAS-3D | --------------------------------------------------------------ENFMDIECFMVLNPSQQLAIAV--LSLTLGTFVLEFIGSLAVADLLGIDFHVFHRKDSRNVFLFKLGGVTASFTASVGSLFLA----AIDRYISIHRPLAYKRIVTRPKAVVAFCMWTIAIVIAVLPLLGWNCEKLQSVCSDIFPHIDETYLMFWIGVTSRLAKTLVLILVVLIICWGP---- | |||||||||||||
3 | 5tj5A | 0.12 | 0.08 | 2.72 | 0.32 | HHpred | -------------------------------------------------------------GAQYREINA--GLPTIVMFAIMFGEIFDMAFII---LLMGVFSMYTGFLYNGTENA----LLFSNSYKMKLSILMGFIHMTYSYFF-SLANHL---DIIGFIPGLLF----MQGIFGYLSVCIVYKWAVDWVMFLSPGT-IDDELYPH---QAKVQVF----LLLMALVCIPWLLLVK-P---- | |||||||||||||
4 | 5yz0A | 0.12 | 0.12 | 4.29 | 0.69 | MUSTER | LYAALKMESMEIIEEIQCQTQQENLSSNSDGISPKRRRLSSSLNPSKRAPKQTEEIKHVDMNQKSILWSALKQKAESLQISLEYSGLKNPVIEMLEGIAVVLQLTALCTVHCSHRTFKDCQHKSKKKPSVVITWMSLDFYTKVLKSCRSLLESVQKLDLEATIDKVVKINSSFEDHILEDLCGMLSL-IYSHSDDGCLKLTTFAANLLTLS--CRISDSYSPQAQSRCVFLLTLFPRRIFLEWRT | |||||||||||||
5 | 4av3A | 0.13 | 0.09 | 3.09 | 0.89 | CNFpred | ----------------------------------------------------------------------------MKEISSYIRSGADSFLAHETKAIFKVAIVIAILLMIFT------TWQTGVAFLLGAVMSASAGIVGMKMATRANVRVAEAAKIGPALKVAYQGGSVMGLSVGGFALLGLVLVYLIFGKWMGQVDNLIYTNWLGINFVPFAMTVSGYALGCSIIAMFDRVGGGVYTKAAD | |||||||||||||
6 | 2pffB | 0.10 | 0.09 | 3.49 | 0.76 | HHsearch-2 | ----MDAYSTRPLTLSHGSLEHTASFFIASQLQEQFNKILPEPTEGFAADDEPELVGKLGYVSSLVEPSKVLEGNDIHALAAKLLQENDTTLVKTKELIK-----NYITARIMAKRPFSNSALFDDYFEELRDLYQTYHVLVGDLETLSELIRTTLDAEKVNILEWLDYLSPISCPLIGVIQLAHYVVTAKLLLRSYLK--GATGHSQGLVTAAETDSWEFVSVRKAITVLFFIGVRCYEAYPNT | |||||||||||||
7 | 3o7pA2 | 0.10 | 0.07 | 2.72 | 0.79 | Neff-PPAS | --------------------------------------------------------------QSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEETAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSGFVSDAAGNIPTAELIPALCFAVIFIFARFRSQT-- | |||||||||||||
8 | 1kfyC | 0.09 | 0.04 | 1.73 | 0.45 | HHsearch | ------------------------------------------------------TTKRK-PYVRPMT-STW-WKKLPFYRFYMLREGTA----V---PAVWFSIELIFGLFALKNGP----EAWAGFVDFLQNPVIVIINLITLAAALHTKTWFELAPKAAIVKD-EKMGPEPIIKSLWAVTVVATIVILFVALYW------------------------------------------------- | |||||||||||||
9 | 2x0lA | 0.07 | 0.07 | 2.64 | 0.65 | SP3 | VSKQVN------MELAKIKQKCPLYEANGQADTVKVPK----------EKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQ-EELKELLNKMVNLKEKIKELHQQYKEASEV----------KPPRDITAEFLVKSKHRDLTALCKEYDELAETQ-GKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLS--TLSLKHWDQD | |||||||||||||
10 | 4k5yA | 0.09 | 0.09 | 3.42 | 0.87 | PROSPECTOR2 | MSPEVHQSNVGIVLTNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLSVAKSELDKAIGRNSNGVITKDEAEKLFNQDVDAAVRGILLKPVYDSLDAVRRSALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVIATFRTGTWDAYDRLRAWMFIIVAWAIGKLYYDNEKCWAGKRPGVYTDSTTSETIQARKAVKATLVLLPLLGITYMLAFVNEVSRV | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |