Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | GGPGEEPPASPSLDDYVRSICQLAQPTSVLDEAAARVRPSRPHRPARSCDKSRPTGSLRDITTRFSGQQPALPGASPADPLDWLFGESQEKRPSRRDLPRRTGPSADPWASCRQMDSGKAQGAPRGRLCDARAPGHSLGRPSRNWRQCSQASGQCGQDAASPSSPRPSSVLRTLYLHLPVIHEL |
1 | 5lj3W | 0.10 | 0.08 | 3.01 | 1.09 | SPARKS-K | | ---------------------------MKFTPSIVIDAPQYYVDHFNGKYNVDKCVILRDLQLETDSESMPSSLKHLTHILD----LTNNDLIMIPDLSRRDDIHT--LLLGRNNIVEVDGRLLPMNVQNLTLSNNSIR--RFEDLQRLRRAPRTLKNLTLIGNQHLANYREHVLRLVPHLETL |
2 | 4k0mC | 0.11 | 0.10 | 3.70 | 1.05 | MUSTER | | AKLGIDPRRSDQ----VRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYGGEEIIQAAAAAAAAAAAAAAAAAAAA------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------- |
3 | 6e5p2 | 0.13 | 0.13 | 4.51 | 1.38 | Neff-PPAS | | ---VESGGGLVKAGGSLILSCGVSNFRISAHTMNRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSS |
4 | 4k0mC | 0.10 | 0.10 | 3.64 | 1.00 | PROSPECTOR2 | | KVYTIEAARTAKFDETVEVHAKLGSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
5 | 5yfpC2 | 0.08 | 0.08 | 3.05 | 1.01 | SPARKS-K | | AEDALETGCPHLLEIHFLLTSARDFQEQVVVMAKEATEDAQRTVMKLFSRLSGIISKFDKLLDGLTYDIVEMARAEQISLAIRLFKEDLRIEAIRNIIKKKEIEIEKSSIKKLPNSKNTARLQDETPKVIEYPTNKGLYQEIMSGTISTRTAPNSISEMEKYVGDQKFDVLDNMDWIFNELIIV |
6 | 6buzN | 0.08 | 0.05 | 2.19 | 0.49 | FFAS-3D | | --------MDETVAEFIKRTILKIPMNELTTILKA---------WDFLSENQLQRQRKESVVQHLIHL--CEEKRSDAALLDIIYMQFHQHQKMKQ--FKNSFKKVTVSFRETAVWIRIAWGTKPNQYKPTYVVYYSQRRNTPLLGQALTIASK------------------------------ |
7 | 3hrsA | 0.14 | 0.09 | 3.17 | 0.30 | HHpred | | ---------TPNKEDYLKCLYELGTRHTNKEIALAEELLKDKKAGYLLTDLGYTTEEIHEEAEVLEH----TVSDHFVERLDQLLDYPKA-CPHGGTIPAKGE-------------------------LLVEKHKLTLEEA----KEK-----GDYILARVHD--N-FDLLTYLER-------- |
8 | 3pmqA3 | 0.11 | 0.09 | 3.13 | 0.92 | MUSTER | | ----------------------------VISNAK------GDQQLNIHGARNDLAGQ-NPNMLADATATNPSMTSFDFKQLIHGLHSSQFAGFEDLNYPGNIGNINDSTGISTVALPLNAAVQPLALNNGTFTSPIAASSDATQNHMRQQGAVFAGTKADATAGTEQGTV-----ADVLKVHPI |
9 | 2uvaG | 0.26 | 0.05 | 1.68 | 0.36 | CNFpred | | -----------FVEDLITSIAELLQSLAREWDAVKQY-------------------------------------PKGLDILQWLHNP------------------------------------------------------------------------------------------------- |
10 | 2pffB | 0.21 | 0.20 | 6.21 | 0.49 | HHsearch-2 | | GLNWLENPSNTPDKDYLLSIVAIAETDSWESFF-------VSVRKAITCYETSLPSPMLSISLTQEQVQSHLPAKNVSGPPQSLYGLNLTLRKAK--APSGLDQSRIPFSERKLKFSNRLPVA-SPFHSHLLVPADLINKDLVKNNVSFNA--KDIQIPVY--DTFDGSDLRVLIIRLPVKWET |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|