>PF15303 (274 residues) MKSEVPSDAPKRQESLKGILLNPEPIGAAKSFPAEVEMIASKVGNEFSHLCSDSQKQKDM NGNRTDQDKSLVVRKKRKSQQAGPSYTQNCPDKENQGVLGLRQHLETQSEDNDSSFSDCI SSPSSSLHFGDSDTVTSDEEKDAPVRHSQAVLNAAGRTHSARSQKWPRTEADSVPGLLMK RPCFHSSSLRRLPYRKRFVKTSSSQRTQNQKERILMQRKKREVLARRKYALLPSSSSSSE NDLSSESSSSSSTEGEEDLFVSPGENHQNNTAVP |
![]() | |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | MKSEVPSDAPKRQESLKGILLNPEPIGAAKSFPAEVEMIASKVGNEFSHLCSDSQKQKDMNGNRTDQDKSLVVRKKRKSQQAGPSYTQNCPDKENQGVLGLRQHLETQSEDNDSSFSDCISSPSSSLHFGDSDTVTSDEEKDAPVRHSQAVLNAAGRTHSARSQKWPRTEADSVPGLLMKRPCFHSSSLRRLPYRKRFVKTSSSQRTQNQKERILMQRKKREVLARRKYALLPSSSSSSENDLSSESSSSSSTEGEEDLFVSPGENHQNNTAVP | |||||||||||||||||||
1 | 5jcss | 0.10 | 0.10 | 3.76 | 1.51 | SPARKS-K | IWNVIELEEPSEED-LTHILAQKFPINLIPKLIDSYKNVKSIYMNTKFISLNKERLDILFKNNGINKPDQLIQSSVYDSIFSEAADCFAGAIFKALEPIAIGESLDIASSRISLFLTQHLENLDDSIKKEKLNIQKKSMNSTLFTNHSLRLMEQISVCIQMTEPVLLVGETTTVVQQLAKMLAKKLTVINVSQQTETYKPKTVAVPIQENFETLFNALKKNEKMLHRCFKLWNEAYKMAQSILKITNTENENENAKKKKRRLNTHEKKLLLDKW | |||||||||||||
2 | 4nl6A | 0.11 | 0.10 | 3.67 | 1.05 | MUSTER | MAMSSGGSGGGVPEQEDSVLRRGTGQSDDSDIWDDTALIKASFKHALK---NGDICETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTSDLLSPICEVANNIEQNAQENENESQVSTDESENSRSPGNKSDNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPP------------------PHLLSCWLPPFPSICPDSLDDADALGS--FRQNQKEGRCSHSLN- | |||||||||||||
3 | 2tmaA | 0.08 | 0.08 | 3.14 | 3.00 | Neff-PPAS | ALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI------- | |||||||||||||
4 | 5gaoE | 0.06 | 0.06 | 2.68 | 1.33 | PROSPECTOR2 | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTKEAYKKLSQKFHGTKSNKK | |||||||||||||
5 | 6em5q | 0.09 | 0.09 | 3.30 | 1.48 | SPARKS-K | -----------------YVDRLLKDICEYFGYTPFAEKLFNLFSPAEAMEFFEANEIARPINTLKTRRRDLAQTLVNRGVNLQPITKVGLQIFDSQVPIGATPEYLAGDPHENERILDMAAAPGKTTYMKNTGCVFANDANKSRTKSLIANIHRLGCTCNYDAREFPKV-IGGFDRILLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDDYALRKRPNVKLVDTGLAIKEAFTSYRGKKFHPSVKLARRYYPHTYNVDGFFVA | |||||||||||||
6 | 2ftcA | 0.13 | 0.08 | 2.92 | 0.50 | FFAS-3D | ---DMALGKKKNVEPFTSVLSLPYPFASEIN-----------------KVA-------------------VFTENASEVKIAEENGAAFAGGTS------LIQKIWDDEIVADFYVAV------------------------------PEIMPELNRLRKKLNKKYPKLSRNSIGRDIPKELFKNGHEIKVDEERENFLQTKIATLDMSSDQ----IAANLQAVINEVCRHRPLNLGPFVVRAFLRSSTSEGLL----LKIDP----------- | |||||||||||||
7 | 5yz0C | 0.22 | 0.10 | 3.23 | 0.40 | HHpred | --------------------------------------------------------------------TSAPGSKRRSEPPA-PR---PGPP--PGTGHPPSKGFSAAPDPDD--------------PFGAHGDFTADDLEELDTLASQASQCPAAARDVSSDHKVHRLL----DGM-SKNPSGKNRIKDQAQYKEELIKNGELHQTESVLEE-----------QRRSHFLLEQ---------------------------------------- | |||||||||||||
8 | 2atyA | 0.10 | 0.10 | 3.64 | 0.98 | MUSTER | SLLCITKDKVDDKPAPKCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVCKTNFSMNGNKANNMWGPTRLPTCVSVFPLEGSIEGRGGSELADPEVPRDCGCKPCICTVPEVSSVFIFPPKPKDVLTITLTPKVTVDISKDDPEDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLAPIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLT------MITDFFPEDITVEQWNGQPAENYKNTQPIMNTNESYFVYQKSNWEAGEGLH | |||||||||||||
9 | 1st6A | 0.15 | 0.03 | 1.11 | 0.29 | CNFpred | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KDLKARMQEAMTQEVSDVFSDTTTPI-KLLAVAATAPSDTPNREEVFEERAANFENHAARL | |||||||||||||
10 | 2pffA1 | 0.16 | 0.11 | 3.76 | 0.55 | HHsearch-2 | AKIVVPFNQGSKQDAIIPFAAIPEQID-SKSEFALRMMGC--VKKQKSARGIETR-----------PAQVILPMSPNHGTFGGDGM-----------------------------YSESKLSLETLFNRWHSESWANQLTVCGAIIGGLMSANNIIAEGIEKMGVRTFSQKEMAFNLLGLELCQKSPVMADLNGG--------LQFVPELKEFTAKLRKEVETSEVRKAVSIET----ALEHKVVNGN-------------------------- | |||||||||||||
|
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |