Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | GIDHSKLPGVKEVCRDFAVLEDHTLAHNLQEQEIEHHLATNVQRNRLVQHDLQVAKQLQEEEDLKARAQIQKHRKDLERQDSEIAQEIQVKLVFEAEQRRRQEEKDEDIARLLQQKELQEEKKRK |
1 | 5cwmA1 | 0.11 | 0.10 | 3.46 | 1.16 | SPARKS-K | | -----------------DPEDELKRVEKLVKEAEELLRQAKEKSEEDLEKALRTAEEAAREAKKVLEQAEKEGDPEVALRAVELVVRVAELLLRIAKESLERALRVAEEAARLAKRVLELAEKQG |
2 | 5lpnB | 0.14 | 0.14 | 4.62 | 1.14 | FFAS-3D | | --EMKRFCKAQTIQRRLNEIEAALRELEAEGVKLELALRPEQQKKLWVGQLLQLVDKKNSLVAEEAELMITVQELNLEEKQWQLDQELRQAEDQVLRKLVDLVNQRDALIRFQEERRLSEL---- |
3 | 3na7A1 | 0.14 | 0.14 | 4.62 | 1.30 | MUSTER | | -LE----PLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALEL-- |
4 | 3na7A1 | 0.12 | 0.12 | 4.22 | 1.24 | Neff-PPAS | | -LEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALEL-- |
5 | 6egcA | 0.12 | 0.12 | 4.24 | 1.03 | SPARKS-K | | IIRELERSLREQEELAKRLKELLRELERLQRESDEDVRELLREIKELVEEIEKLAREQKYLVEELKRQEIIRELERSLREQEELAKRLKELLRELERLQRELLREIKELVEEIEKLAREQKYLVE |
6 | 5szhA | 0.18 | 0.16 | 5.23 | 1.13 | FFAS-3D | | ---------AQAIQRQLEEVEERQRASEIQGVRLEKALRGEQDEAQLLQEWFKLVLEKNKLMRYESELLIMAQELELEDHQSRLEQKLREKMDLNEEQEVFTEEQRDKLVDSLEEQRIREKAE-- |
7 | 5xisA | 0.25 | 0.13 | 3.96 | 0.29 | HHpred | | -------------------------------------------------------RREYEEEISKVAAERRASEEEENKASEEYIQRLLAEEEEEEKRRREQLKSDEELARKLSIDIN------- |
8 | 2otoB | 0.11 | 0.11 | 4.02 | 1.23 | MUSTER | | AIQNIRLRHENKDLKARLENAEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDYDLAKESTSWDRQRLEKELEEKKEALELAIDQASRDYHRATALEKELEEKKKALELAIDQASQDYNR |
9 | 4iloA | 0.13 | 0.12 | 4.17 | 0.60 | CNFpred | | ---------VEEKEQEMEKLKDQIKGGEKRIQEISDQINKLENQQAAVKKMDEFNALTQMTAANKERRTLEHQLSDLMDKQAGSEDLLISLKESLSSTENSSSAIEEEIRENIRKINEEGRSLLS |
10 | 5veyC | 0.19 | 0.06 | 2.06 | 0.78 | HHsearch-2 | | ------------------------------------------------GHMDP-------------VLREMEQKLQQEEEDRQLALQLQRMFDNE----------------------RRTVSRRK |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|