Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| Seq | DDFDVFTKAPFSKKVSQQDGQVVGTEPLLSPASPRSVDIFGCTPFQPSLLPKTGGSKEDLFGLVPFEEIAGSQQQKVKQQRNLQKLSSRQRRMKQEVSKNNGKRHHGTPTTTKKALKPSYRTPERARRHKKAGRRDSQSSNEFLTISDSKENISVALTDSKDRTNPLQTDESLLDPFGAKPFHPPDLMRHPQHQGFSDNRGDHGAVVVAGRPRQSSLHGAIHGGDGLKTDDFGAVPFTELVVQSAQSQQQQALELDPFGAAPFPSKQ |
1 | 6buaA | 0.07 | 0.07 | 2.91 | 1.23 | SPARKS-K | | LPRVGEICYAYEIFLEPQFESCEYTEHMYLNLTPRNYAILLRNKLPRLAEMPNQGKLHVRVANAPLEVIIQNSEQLELLHQFHGMVFRDILKIWHPFFVLDRRSKENVPLILGEQKCFDWELMTNFRRLPQSHGSNVQQREQQPAPRPEDFEGKIVTQWYANYDKPMLVTKVHRELTPLSYMEKNQQDKTYYEFTMSKYG---NRIGDVVHKDKFMIEVRDLTEQLTFYVHNVILIPELCFNFNFPGDLWLKLIFLPSILNRMYFLL |
2 | 6etxG | 0.11 | 0.11 | 3.93 | 1.10 | MUSTER | | NHPELFERQETWSPFHISLKPYHISGQIRVFNHSRDRWLRVLSPFAPSLFHRKGINEESCFSFLRFIDISPAEMANLMLQGLLARWLALFLSLKSWGAPEGESHQRYLRNKDFLLGVNFPLSFPNLCSCPLLKSLVFSSHCKAVSGYSDQVVHQRRSATSSLRRCLLTELPSFLCVASPRVTAVPLDSYCNDRSAEYERRVLKEGGSLAAKQCLLNGAPELAADWLNRRSQFFPEPAGGLWSIRPQNGWSFIRIPGKESLITDSGKY |
3 | 2bsgA | 0.06 | 0.06 | 2.48 | 2.08 | Neff-PPAS | | -QINKKDISDLKTLTSEHTEILNGTNNTVDSILKHRIINNTDVITSQGIRLSLTIEVGNLREELVYSRLNEIDTKQTTVESDISAIKTSISIITS------VNTNTDNIASINLEIKQRLTVIETSIIKGQIKDNTTSILRANVSWLNQIVSLLNRVSTIETSVSGLNNAVQNLQVEIGNGIKGQVVALNTLVNGTNPNGSTVEERGLTNSIKANETNIASVTQEVNTAKGN----ISSLQGDVQALQEAGYIPEAPRDGQAYVRKD |
4 | 4bmlA | 0.08 | 0.07 | 2.99 | 1.31 | PROSPECTOR2 | | VRYATARSYDLRGFTGKLSAGYHTPGTPIVGDAGIKANEKTLVMDDLLVSSQFVYSLDEIFSQYSTR-----AEVSKQIGEALATHYDERIARVLAKASAEASPVTGEPGGFHVNIGAGNTNDAQAIVDGVLDERSAPQEGRVAVLSPRSSVDTNILNREIGNSQGDMNSGKGLYSIAGIRILKSN--NLAGLYGQDLSSAAVTGENNDYQVDASALAGLIFHREAAGCIQSVAPTIQTTSGDFNVQYQGDLIVLRTSVAGSF-QAA |
5 | 4btgA3 | 0.14 | 0.13 | 4.63 | 1.16 | SPARKS-K | | GSARGLTQAFAKNQLSVGALQLPLQFTRTFSASMTSELLVGRTATYPFD---ANAVVSSVLTISTPKELDPSARLRDQLRSNLALFIAYQDMVKQRAEVIFSDEETIIPWFIEEVSPFKLRPINETTSYDHMGQPSHVVVYEDWQFAKEITAFTPVKLANNSNQRFLDVEPGILAPIGVNSNGAEMTLGFPSVVERVDESLEARAVAHNPEAAEQGSLYLVWNVRTELRIPVGPEPLEAIAYNKQPSEVLQAKVLDLANHTTSIHIW |
6 | 2xd8A | 0.10 | 0.09 | 3.51 | 0.63 | FFAS-3D | | KSLQFIYTGRMTSSFHTPGTPILGNADKAPPVAEKTIVM-----DDLLISSAFVYDLDETLAHYELRGEISKKIGYALAEKYDRLIFRSITRGARSASPVSATNRVGSGTNESDAFTASALVNAFYDAAAAMDEKGVSSQGRCAVLNPRQYYASNGLVNRDVQGSALQSGNGVIEIAGIHIYKSMNIPFLGKYGVKYGGTTGETSPGNLGSHGTNAELGAKSCGLIFQKEAAGVVEAIGPQVQVTNGDVSVIYQGDAMGADYLNPA- |
7 | 1u0kA | 0.09 | 0.07 | 2.68 | 0.28 | HHpred | | WQLDVFAERPLTGNGLAVFDDASLDDAA-QAWTR-E---LRQSIFLLPGDPRTLEEELPFAGHPLL--GA----AALLHHLRGGD--N-EQHWTLHLA--SKSVVAGSGFYAEDQGRAEFGATRWFA--EAFSLSAVSTGLPYLLVTAALGRARQVN-D----LQEAL-DK--LGAAFVYLLDVDG--REGRTWDN-LGLVE--------DVATGSAAGPVAAEYG-LAA--RG---EPFVLHQG---------------------- |
8 | 6fmlG | 0.11 | 0.11 | 3.92 | 1.07 | MUSTER | | NHPDLFERADTSSPFFCGHFAETGSFLREGTNVALGY----STRSLVEYRLPRLIWCDGGRLDKPGPGNLVAGFRSKYLNHMMNIWTPENIRSSLEGIENFTWLRFVDTSLQEAYRASHTDVFARAVDLASKQNRLGHMQIVYDEPEDKKWTPVHALFQICERENPKAVAEITTEGVGLCRLEKAARPRASAPPIEVVCDSRSAVIERENIMFHPAMRKALFGPTPSEIKEASFGPRPVTLYPPRALLPAPDHDKQRFTNITVPSMA |
9 | 2pffB | 0.17 | 0.16 | 5.43 | 0.91 | HHsearch-2 | | EQFNELVGKFLGYVSSLVNCYLEGALAAKLLQENDTTRIMAKRPFDKKSNSALNAQLVAIFTDDYFEELRDLYQTGDLIKFSAETLSELIRTT-LDAEGLNILEWLENPNTPDKDYLLSIPTPGELRSYLKGATGHSQG---LVTATDSLENNEGVPSPMLSIS-NLTQEQVQSHLPAGKQVEISLVNGAKQLYGLNLTLRK-AKAPSGLDSRIPFSERKFSNRFLPVASPFHLVPASDLINKSFNAKDIQIPVYDTFDGSDLRVKW |
10 | 3cnfT | 0.06 | 0.06 | 2.60 | 2.06 | Neff-PPAS | | ----NFSETDRGHPLFRLPLKYPSKAIPADELIDNLHSWMRSVHLLHVRSEDNTLRYNWMLGVYARSTNYTTPVGQLVVNAPAILNYSNPQDAFNSVFVALGIDYIDIPITNSNIFDPTMTEVNHILALMRKSTRSESDMIDHFAAKILEDWRQKEKLDKGALVEADRVVQRLIPLSSSTYVQRDTYYQHANDQLRRLYRRMYNDSRTLYMTQRHQELLLAQITADPNILLYPYTYIFTTAYTSMNYISNTGQGRIKHSLAVTGTTE |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|