Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| Seq | MASDSDVKMLLNFVNLASSDIKAALDKSAPCRRSVDHRKYLQKQLKRFSQKYSRLPRGLPGRGAEPHLKRGPEDRPGRSLPLESGHSSSPGGGGGCKEKALGNLDREESLSRERTLHGPDPGAARPGQVPMRKRQLPASFWEEPRPTHSYPVGLEGGLGPREGPPYEGKKHCKGLEPLGPETAPVPTSPRAPAEKEPLKMPGVSLVGRVSAWSCCPFQYHGEPVYPSPPGALPQSPMPSLGLWRKSTASPGELAHFCKDMEGPGQKVYRPVVLKPIPTKPA |
1 | 4nl6A | 0.11 | 0.10 | 3.59 | 1.22 | SPARKS-K | | VLFRRGTGQSDDSDIWDDTALIKAYDKAASFKHALKNGD-----------------ICETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYP-ATIASIDFKRETCVVVYNREEQNLSDLLSPICEVANNIEQNAQENENSQVSTDESENSRSPGNKSDNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLKF-----------NGPPPPPPPPHLLSCWLPPFPSGPPIIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYM |
2 | 4nl6A | 0.15 | 0.13 | 4.32 | 1.08 | MUSTER | | VPEQED--SVL-FR---SDDIKA-YDKAASFKHALKNGD-----------------ICETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGEQNLSDLLSPICE-NIEQNAQENENESQVSTDESENSRSPGNKSDNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGPPIIPPPPPICPDSLDADALGSFRQNQKEGRCSHSLN-------------- |
3 | 3kysB | 0.38 | 0.07 | 2.00 | 1.21 | HHsearch-2 | | -----------------------------------------------------------------------------------AGH-QIVHV-RGDSETDLEALFNA----------VMNPKANVPQTVPMRLRKLPDSFFKPPE---------------------------------------------------------------------------------------------------------------------------------------- |
4 | 3cnfT | 0.06 | 0.06 | 2.62 | 1.69 | Neff-PPAS | | TSHTLRLLGPFQYFNFSETDRG---HPLFRLPLKYPSKAIPADELIDNLHSWMRSVHLLHVRSEDNTLRNYTTPVGQLVVNAPAILNYSNPQDAFNSVFVALGIDYIDIPITNSNIFDDSSTPYNVRIWHAPTMTEVNHILALMRKSTLVSTHSSWHWDVLHTFHYRSESDMIDHFAAKILRQKEKLDKGALVEADRVVQRLIPLSSSTYVQRLAAISRLSTALLQLSDTYYQHANDQLRRLYRRTLYMTQRHQELLLAQITADPNILLYPYTYIFTTAYT |
5 | 3kysB | 0.38 | 0.07 | 2.00 | 1.40 | HHsearch | | -----------------------------------------------------------------------------------AGH-QIVHV-RGDSETDLEALFNA----------VMNPKANVPQTVPMRLRKLPDSFFKPPE---------------------------------------------------------------------------------------------------------------------------------------- |
6 | 2nbiA1 | 0.12 | 0.11 | 3.91 | 1.40 | PROSPECTOR2 | | QPSDLNPS-----------------SQPSECADVLEECPIDECFLPYSDA--SRPPSCLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPAPFECSPDNPMFTPSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQPSQCAEVIEQVLPTPQNINCPACCAFECPDNPMFTPSPDGSPPICSPTMMPSPEPSSQPSDCGEVIEEPSPSPSAVTVPLTPAPSSAPTR |
7 | 5yfpD | 0.09 | 0.09 | 3.48 | 1.17 | SPARKS-K | | DENHNIFKTALDFQRLFYNLLN--VFNTANTFRE-KISYCILDLLNHFYNYYLGLFNLIGTSDRHLTRKIITAWLQNGILMDQEQKILNGDETLFHEESIELFKEIPHFYQAGKGLSKSDLFNNLT-LDTILQFSASVLWILNWLPGLKKAINIDEVSQEPMLDADRLRSSWTFSESMDLNYSNPSSSPNSLGNLKILLDDKASKKFDETIDGFKTLKFKLITILRFNIRALCIYDIGSFFQNTKIWNMDVGSIELDQNIASLISELRRTESKLKQQLPEK |
8 | 4k0mC | 0.08 | 0.06 | 2.21 | 1.02 | MUSTER | | --------------------------------------------------------------------KVYTIDEAARTAKFDETVEVHAKLGIDPR-RSDQNVRGTVSLPHGLGKQVRVLAIAKGEKI-KEAEEAGADYVGGEEIIQAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-----AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------------- |
9 | 2cseH | 0.13 | 0.13 | 4.55 | 1.48 | Neff-PPAS | | MVCGGAVVCMHCLGVVGSLQRKLKHLPHHRCNQQIRHQDYVDVQFARVTAHWKRGMLSFVCQMHAMMNDVSPEDLDRVRTEGGSLVELNWLQVDPNSMFRSIHSSWTDPLQVVDDLDTKLDQYWTALNLMIDSSDLVPNFMMRDPSHAFNGVRLEGDARQTQFSRTFDSRSSLEWGVMVYDYSELEHDPSKGRARKELVTPARDFGATTPILGKMPAVFSGMKMYPFIKGTAKLKTVRKLVDSVNHAWGVEKIRYALGPGGMTGW-YNRTMQQAPIVLTPA |
10 | 5gaoE | 0.07 | 0.06 | 2.67 | 1.38 | PROSPECTOR2 | | AAAAAAAA--------AAAAAAAAAAAAAA---------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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