Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220
| | | | | | | | | | | |
| Seq | MEAVILLPLVLGFLLLPLLAVLLMALCVHCRELPDSYDSAATDSSIPHSIIIKRPPTLAPWPPATTYPPVTSYPPLSQPDLLPIPRSPQPPGGSHRMPSSRQDSDGANSVASYENDEPACEDEDEDEDEDYHNEGYLVVLPDTAPATGTTVSSAPAPSNPGGLRDSAFSMESGEDYVNIPESEESADASLDGSREYVNVSQELQPTARTKPATPSSQKVEDEEEEEEEGAPDYENL |
1 | 5h7iC | 0.12 | 0.12 | 4.18 | 1.14 | SPARKS-K | | DRKCRNESLCSIYSRLFKLGLFFAQLCVKSVVSSAELQDCISTS-HYATKLTRYFGVLTIFPCATMATTDNSWVSIDEPDCLLFHTGARWSQGMHTTSPLQIDPRANIVSLTIWPSILRLQDAMKFVKELFTVCETVLSLNALSRSTG----VPPELHVPQISSMMKRKIVQDDILKLLTIWSDAYVVELNSRGELTMNLPKRDNLTTLTNKSRTLAERAESWYQQVIAQKRYQQF |
2 | 2nbiA | 0.13 | 0.13 | 4.53 | 1.20 | MUSTER | | ADVLEECPIDE--CFLPYSDASRPPSCLSFGRPDCDVLPTPQNINCPRCCATERPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDTAVGRPDCDVLPFPNNLGCPACCPFECSPDNPMFTPSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQPSQCAEVIEQCPIDECFLPYGDSSRPLDCTDPAVNRPDCDVLPTP--QNI |
3 | 6e5p2 | 0.11 | 0.09 | 3.25 | 1.86 | Neff-PPAS | | --------------------------------ESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVEDKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAKDYFPEPVTNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTVNHKPSNTKVDKKVEPKS----- |
4 | 4k0mC | 0.09 | 0.08 | 2.86 | 1.36 | PROSPECTOR2 | | --------------------------------KVYTIDEAARTAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQAAAAAAAAAAAAAAAA--------------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
5 | 1zvoC | 0.09 | 0.09 | 3.36 | 1.09 | SPARKS-K | | ISVDTSRNQFSLNLRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHPTSQPQRTFPEIQRRDSYYMTSSQLPLQQWRQGETASKSKKEI----FRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNRGGEEKKKEKEKEEQEERETK------TPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFV |
6 | 2k7mA | 0.15 | 0.07 | 2.29 | 0.48 | FFAS-3D | | -------------------------------------------------------------PLGSTSLVQGLTPP---PDFNQCLKNSPDEKFFSDFSNNMGSRKNPDPLATEEVPNQEQIPEEGFIHTQYGQK-------PEQPSGASAGHRFPQGYHSDKRRLSKASSKARSDDLSV--------------------------------------------------------- |
7 | 2kncA | 0.23 | 0.04 | 1.20 | 0.29 | HHpred | | --WWVLVGVLGGLLLLTILV-LAMWKVGFFKRNPPLEEDDEEG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
8 | 6fmlG | 0.09 | 0.08 | 3.28 | 1.18 | MUSTER | | LPRLIWCDGGRLDKPGPGNLVAGFRSKYLNHMMNIWTPENIRSSLEGIENFTWLRFVDTSLQEAYRASHTDVFARAVDLASKQNRLGHMQIVYDEPEDKKWTPVHALFQICERENPKAVAEITTEGVLRDLMNIARVKYRELGLCRLEKAARPRASAPPIEVVCDSRSAVIERENIMFHPAMRKALFGPTPSEIK--EASFGPRPVTLYPPRALLPAPDHDKQRFTNITVPSMARF |
9 | 5gkoA | 0.15 | 0.03 | 1.00 | 0.43 | CNFpred | | ---MRTFLTMLGIIIGIASVVTVVALGNGSQQQ----ILSNISSLGTNTITVFQG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
10 | 2kluA | 0.15 | 0.04 | 1.42 | 0.59 | HHsearch-2 | | VPGSMALIVLGGVAGLLLFIGLGIFFSVRSRHRRRQ-AERMSQIK---RLLSEKKTSQSPHRFQKTHSP------I---------------------------------------------------------------------------------------------------------------------------------------------------------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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