Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | MAGVVYPRQAPVDLDIYQSSYMVDYKPYGKHKYSQVTSQEQMKLDTQLRNKEFYRPIPSPNPKLEDGYPAFKRPFMTAKDLGHPGFFPSQDLVTTAEDECRFTSICPSMYPVSHALYLAHGDPNLVHQSADFPCLLEPQRQPAAEEDKGYILLPGCSCPHHCRVKVPILNRWGPLMPFYQ |
1 | 4btgA | 0.14 | 0.14 | 4.90 | 0.99 | SPARKS-K | | MSEVSPFKLRPINIDMGQPSHVVVYEDWSNQRFLDVEPGISDRMSATLNRTAVYEAVSQRGTVNSNGAETLGFPSVVERDYALMVAIAALRTGIVDESLEARASNSMFNYYAAVMHYAVAHNPEVVAEQGSLYLVWNELRIPVGYNAIGSIRTPEPLAIAYNKPIQPSEVLQAKVLDLAN |
2 | 3cnfB | 0.14 | 0.14 | 4.75 | 0.44 | FFAS-3D | | PDGTVLRYDDQIDIEAFRWSYFLDELQLRRLSVGLITNPRIARRFNGVRYLTDDDPDPDFVPDVPEGYVAVQYAHRLFSSHPPTGMAYPSAGMSKLVADNIIASVIKSNWVVDILEYTAEVMSEGYTQHVDAESIMDGLLRPEASGEDMRLIYPLQPISVARSMRAIVNHNEVDRPREMD |
3 | 2pd0A | 0.18 | 0.08 | 2.71 | 0.34 | HHpred | | -----------LGVNSFAL---RQFVEYRGSYIP-RSPYEFLRNVNYIIE---------NNPTLVDGYADFCKHIFI-PN--FTEAKQSIVK-ITNENEKYIK----TG-------YISRRD---------------------------------------------------------- |
4 | 3dpaA | 0.15 | 0.14 | 4.66 | 0.70 | MUSTER | | LDRAVFDGSEKMTLDISQLPYLAIENENQEKIITGATPP-VQRLDPMVR---STTPDISKLP--QDRESLF---YFNL--REIP---PRSEKANVLQIALQT-KIKLFYRPAAIKTRPNEVWQDQLILNKVVIGLGSEKQAEEGEFETVM-LSPR-KSANYNTPYLSYINDYGGRPVLSF |
5 | 5tsyA | 0.14 | 0.03 | 0.95 | 0.29 | CNFpred | | ------------SAVAVASIHAGWD----AGQYREVPQDDRDWLKGHLDALR-------------------------------------------------------------------------------------------------------------------------------- |
6 | 2pffB | 0.14 | 0.13 | 4.54 | 0.51 | HHsearch-2 | | FIGVRC-YEAYPNTSILEDSLENEGVPSPMLSISNL-TQEQVQVNKTNSGKQVEISLVNGAKNLVVSGPPQAKAPSGLDQSRIPF----SERKLKFNRFLPVPFHSHLLVPASDLI---NKDLVKNNVSFNAKDIQIPVYDTFDGSDLR--VLSGSISERIVDCIIRLPVKWETTTQFKA |
7 | 6e5p2 | 0.07 | 0.07 | 2.94 | 1.13 | Neff-PPAS | | -GGGLVKAGGSLILSGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKTVSRDDLEDFVYLQMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL |
8 | 2qlvA | 0.21 | 0.06 | 1.94 | 0.51 | HHsearch | | NLGAEWKDLMKMVIQLFQNNYLVDFKFDGWESESAYPLHLTTKLIMELAVNS-------------------------------------------------------------------------------------------------------------------------------- |
9 | 2fyiC | 0.15 | 0.12 | 3.91 | 0.65 | SP3 | | LPEVIFPE---VRLELIQGT--------------------PQEIATLLQNGEASERLSND-PQLVHDHPLTQISPLTLESI------AKWPLIT-------YRQGITGRSRIDDAFARKGLLADIVLSAQDSDVIKT-----YVALGLGIGLVAEQSSGEQEEIRLDTRHLF-DANTVWL |
10 | 1jvr | 0.13 | 0.09 | 3.26 | 0.87 | PROSPECTOR2 | | HMGQIHGLSPTP----------------IPKAPRGLSTHHWLNF---LQAAYRLQPGPSDFDFLKTPIWLNPIDYSLLASLIPKGYPGRVV---------------------EIINILVKNQVSPSAPAAPVPTPICPTTTP-----------PPPPPPSPEAHVPP--PYVEPTTTQCF |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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