Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | MKSPTVQRSAGGAGAAGTGAAPSLDSVVAADLSDVLCEFDEVMADFSSPFHERHFEYEEHLKRMKRRSSASVSDSSSGFSDSESADSPYRHSFSCSDEKLNSPTVSTPSLSSPLVVPRKAKLGDTKELEDFIADLDRTLESM |
1 | 1oxbA | 0.06 | 0.06 | 2.51 | 0.74 | SPARKS-K | | -STIPSEIINWTILNEIISMDDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEKNELDNLGHFLKGSSAALRKMEHFFPNKTELVNTLSDKSII-NGINIDEDDEEIKIQVDDKDENSIYLAKALNQSRLEFKLARIELSKY |
2 | 1irlA | 0.09 | 0.07 | 2.72 | 0.59 | FFAS-3D | | ------------------APTSSSTKKTQLQLEHLLLDLQMILNGINNPKKATELKHLQCLEEELKPLEEVLNLAQSKNFHLRPRD--LISNINVIVLELKGSETTFMCEYADETAT------IVEFLNRWITFCQSIISTL |
3 | 1uk5A | 0.13 | 0.09 | 3.18 | 0.25 | HHpred | | -SSGAP---AEPAAPKSGEAETPPKHPGVLKVEAILEKVQGLEQAVDSKTDKKYLMIEEYLTK--ELLAL---D---SVDPE-------G------RADV-----------------RQARRDGVRKVQTILEKLEQKASGP |
4 | 6nmcB | 0.13 | 0.13 | 4.39 | 0.77 | MUSTER | | ---SKAMYEAKERYAKKKMQENTKIDTLTDEQHDALAQLCAFRHKFHSNLSESAFSMQSDENSKLREVGLPSFYDNSHIPDDSFREWFNFANYSELSET-IGLELDLDDDETYELVYDELYTEAMGEYEELNQDIEKYLRRI |
5 | 1yviA | 0.07 | 0.04 | 1.72 | 0.47 | CNFpred | | ---------------------------VSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQLKG---------------------SSASVGAQKVKFTC------------RQFCQDKSRDGCLMALAVVRNDFYDL |
6 | 1vt4I3 | 0.15 | 0.11 | 3.56 | 0.59 | HHsearch-2 | | ----------------------------EYALHRSIVDHYNIPKTFDSDDLIPPYLDQHHLKNPERMTLFRM-----VFLDFRQKIRHDSTAWNASGSILNTLQQLKFYK--PYICDN------DPKYERLVNAILDFLPKI |
7 | 1eq1A | 0.07 | 0.07 | 2.89 | 0.79 | Neff-PPAS | | -DAPAGGNAFEEMEKHAKEFTQDFNKALKDGSDSVLQQLSAFSSSLQGAISDANGKAKEALEQARQNVEKTAEELRKAHPDVEKEANAFKDKLQAAVQTTVQESQKLAKEVASNMEETNKKLAPYDDFVKHAEEVQKKLHEA |
8 | 4finA1 | 0.17 | 0.05 | 1.61 | 0.30 | HHsearch | | ----------------------------VSEVVNALKRLDEVYALYADPD---A-DFDKLAAEQGRLEEI--IQ-------------------------------------------------------------------- |
9 | 1eq1A | 0.08 | 0.08 | 3.08 | 0.57 | SP3 | | -DAPAGGNAFEENSLVNSKNTQDFNKALKDGSDSVLQQLSAFSSSLQGAISDANGKAKEALEQARQNVEKTAEELRKAHPDVEKEANAFKDKLQAAVQTTVQESQKLAKEVASNMEETNKKLAPIKQAYDDFVKHAEEVQKK |
10 | 2i3yA | 0.11 | 0.11 | 3.85 | 0.67 | PROSPECTOR2 | | DCHKDEKGTIYDYEAIALNKNEYVSFKQYVGLTAQYPELNALQEELKQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRRATVSSVKTDILAYLKQF |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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