>PF15146 (440 residues) KVGQKIKELLSGIGNVSERVSFLKKAVDQRNRALTCLNEAMNVSCALLSNREGPKPISCT TTTAWSRFQLRDVLTATCLLENSSDYSLDQGWTFCIQVFTSSCALEVDSVGSAITYTIPV DQLTPGSKREVTLPLGSNENGKLDLPVTISCALFYSLKEILGSALTSSDSLDAPFFDDCP PDILPDRDGIFLPLGEYTVDMLQCLRFPSLAVAEVQVPGLPSPTSDPVKTFLEASRGQVD PEHMKNIEPMGPDFLRAKYLPPSVASVKVSSELLKNALKEYCSEVPLCCATLQWLLAENS IVDIVKTQVLTEVQGVAPDGNDIHLLVREVAVTELCPAGPIQAVEIQMESPSLANMCRVH HAVIRRIQVMIMEQAAQGSNPPDLRVQYLRQIHANHEMLLKEVQLLRDRLCVEDDASASA AAEKLLQVYKQLRNPSLILL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | KVGQKIKELLSGIGNVSERVSFLKKAVDQRNRALTCLNEAMNVSCALLSNREGPKPISCTTTTAWSRFQLRDVLTATCLLENSSDYSLDQGWTFCIQVFTSSCALEVDSVGSAITYTIPVDQLTPGSKREVTLPLGSNENGKLDLPVTISCALFYSLKEILGSALTSSDSLDAPFFDDCPPDILPDRDGIFLPLGEYTVDMLQCLRFPSLAVAEVQVPGLPSPTSDPVKTFLEASRGQVDPEHMKNIEPMGPDFLRAKYLPPSVASVKVSSELLKNALKEYCSEVPLCCATLQWLLAENSIVDIVKTQVLTEVQGVAPDGNDIHLLVREVAVTELCPAGPIQAVEIQMESPSLANMCRVHHAVIRRIQVMIMEQAAQGSNPPDLRVQYLRQIHANHEMLLKEVQLLRDRLCVEDDASASAAAEKLLQVYKQLRNPSLILL | |||||||||||||||||||
1 | 3tnfB | 0.08 | 0.07 | 2.62 | 1.00 | Neff-PPAS | QAIKRAQENIKKGEELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSE---ELSLSEINEKMEAFSKDSEKLTQLMEKHKGD-------------EKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSLKDAHLAIN---------KDQEVVEHEGQFYLLQKGQWDAIKNN--------------PAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNLIMSTDPKENEEATKLLHKHNGLNLKLANLQDMLAVHRKE--------KSFFNEKGEEVTSLNDAGKDQQLFNLGGKFYPIHKEQKILEKD------GKFYLLKQGEDWESIKDSPEKQKKAEHDFHKLQYETPMTVKKLVHHNKGLETTIHKERVEETKQQLEDNGKEKIEIANNISK----------------- | |||||||||||||
2 | 4g1pA | 0.10 | 0.09 | 3.27 | 1.07 | PROSPECTOR2 | MSHS-LTSVFQKIDSLKPQFSRLTKAIQSDESLRSKVFDKAKFISEQLSQSGFHDIKMVDLGIQPPPSTPNLSLPPVILSRFGSD---PSKKTVLVYGQPAQLEDGWDTEPFKLVID------EAKGIM---KGRGVTDDSGQEFPVNLVTCFELKLDELIKKEANGYFKGVDAVCISDNYWLGTKKPVLTYGLRGCNYYQTII----EGPSADLHSGIFGGVVAEPMIDLMQVKGKILIDGIDEMVAPLTEKEKALYKDIEF------SVEELNAATGSKTSLYDKKEDILMHRWRYP------------------------SLSIHGVEGAFSAQGAKPAKVFGKFSVPDMD-----SEKLTSLVQKHCDAKFKSLNSPNDPFNAQFTAAKKATKLVYGVTLTFQDALNTRGDDGAVGGMKTMAAYLQYYSESP---E | |||||||||||||
3 | 4fyeA | 0.10 | 0.08 | 2.95 | 0.71 | SPARKS-K | KKSSANKDFLEQLAKVEGSLQQFTQAVAKASGHLKALDKEGHNIRSHN----------------------RDTLIHRFKAPNS-----KEGEEQFIMYIPC-------GRYTKRQQRLMGKDLVLGNSMARMIAGTRHSDGT----VTIHHDSFSGPGARMP----------YSDFKGADDYKKLAIKAVTLINQEEVIQTLAQRQIDRMTNPEEYRPDELPDAEKARAQLIKLYVEHNPLS--------------------VTECYTQV---VTAGQRVAAENQKEQFEYVRQMMDAFDGSK-------AKITIQTGSNTAVGYQARMSSFRQVGALNPLS---------DNSVTKNQNARFVNQMTDDVIRNLDKVANLGDYKAGALHTLLKVKGAYREALFSYFEEYQKGEGKSIKKQESAIYELHNQIDALRKAYY | |||||||||||||
4 | 4km5A | 0.11 | 0.08 | 2.87 | 0.89 | FFAS-3D | --ASKLRAVL-------EKLKLISTAAGMVKGVVDHLLLRLK---------CDSAFRGVGLLNTGSKISAPNEFDVMFKLEVPR-------------------------------IQLEEYSNTRA---YYFVKFKRNPKENPLSQFLEGEILSAKFRKIIKEEINDIKDTD-----VIMKRKRGGSPAVTLLISKISVDITLALESKSSWPASTQEGLRIQN--WLSAKVRKQLRLKKHAKEGNGFQEE---------------TWRLSFSHIEKEILNNHGKSKDCLKLMKYLLEQLKERFK--------------------------------------------DKKHLDKFSSYH------VKTAFFHVCTQNPQDSQWDRKDLGLCFDNCTYFLQCLRTEKLENLFSSNLIDKRSKEFLTKQIEYERNNEFPVF | |||||||||||||
5 | 1pzdA | 0.16 | 0.09 | 3.02 | 0.30 | HHpred | -------------------------AATRQEIFQEQLAAVPEFQGLFKSSSETEYVIRCTK------HTFTDHMVFQFDCTNTLNDQLEN---VTVQMEPSE-AY-------EVLCYVPARSLPYNQPGTCYTLVALPKEDPTAVACTFSCVMKFTVKDCDPTTGE----ADDEGYED------------EYVLEDLEVTIADHIQKVM-K-------------LNFEAAWDEV-----------GDE------------FQKEETFTLSEEAVGNIVKF-----------LGMHPCERSDKVPDNNTHTLLLAGVFRGGHDILVRSRLL--LL---DT--VTMQVTARSSEEL-PVDIVLASVG--------------------------------------------------------------------------- | |||||||||||||
6 | 1st6A | 0.11 | 0.11 | 3.85 | 0.69 | MUSTER | TVKELLPVLISAMKIFVTTKNTIEEALKNRNFTVEKMSAEINEIIRVLQLTSWDEDAWASKDTEAMKRALALIDSAKGWLRDPNAPPGDAGEQAIRQILLCAGKERREILGTCKTLGQMTDQLGQGATPMAMQKAQQVSQGLDLLTAKVENAA--KLEAMTNSKQAIAKKIDAAQNWLADPNGGSEGEEHIRGIMSEARKVA------ELCEEPKERDDILRSLGEISALTAKLSDLRRHGKGDSPEARALAKQIATSLQN----LQSKTNRAVANTRPVKAAVHLKIEQAQRWIDNPTVDDRGVGQAAIRGLVAEGPYRQDLLAKCDRVQLADLAARGEGESPQAR---AIAAQLQDSLKDLKARMQEAMTQEVSDVFSDTTTPIKLLAVAATREEVFEERAANFENHAA-AVGTANKTTVEGIQATVKSARELTPQVV | |||||||||||||
7 | 5goeA | 0.13 | 0.09 | 3.25 | 0.79 | CNFpred | LAKKAITAIFDQLLFVTEGSHFVEATYEDDLVEMQGYKDKLSIIGEVLS----RRHMKVAFFGRTSS---GKSSVINAMLWD---KVLP-NCFLSVEGTDG-AYLMTE----GSDEKKSVKTVN-GCLVRVFWPKAKC---LLRDDLVLVDSPGT-IDKFCLD-----------------------ADVFVLVAN-----SESTLM-------------------NTEKHFFHKVNERLSK--------------------PNIFILNNRWDASASEPEYMEDVRRQHMERCLHFLVEELKVVNALEA--NRIFFVS---------AKEVLSAR--------------LAEGFHARLQEFQNFEQIFEECISQSAVKT---FEQHTIRAKQILATVKNIMDSVNLAAEDKRHY-LPKEIDQLEKIQNNSKLLRNKAVQLE | |||||||||||||
8 | 2xzzA | 0.11 | 0.03 | 0.90 | 0.35 | HHsearch-2 | ------------------------------------------------------SMLSLTLLG---AAVVGQECEVQIVFKNPLPVTLTNVV-FRLE-----------GSGLQRPKILNVGDIGGNETVTLRQSFVPVRPGPRQLIASLDSPQ---LSQVHGVIQVD---------------VA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 5h7iC | 0.11 | 0.10 | 3.68 | 0.93 | Neff-PPAS | ---------LNRVSDEEQLLPVVRAILLQHDTFLLKNYANKAVLDALLAGLTTKDL---------PDTSQGFDANFTGTLPLEDDVWLE------QYIFDTDPQLRFDRKCRNESLCSIYSRLFKLGLFFAQLCVKSVVSSAELQHYATKLTRYFGVLTIFPCAKAIRYKPSTMATTDNSWVSIDEPDCLLFHTGTLLARWSQGMHTTSPLQIDPRANIVSLTIWPSILRLQDAMKFVKELFTVCETVLSLNALSRSTGVPP------ELHVLLPQISSMMKRKIVQDDILKLLTIWSDAYVVELNSRGELTMNLPKRDLTTLTNKSRTLAFVERAESWYQQVIASQRQKRYQQFLAMKMTQVFDILFSLTRGQPYTETYLSSLIVDSLQDSTKEASEILAGLQGILPMDISVNSLDKNRFSKLLQIHKSKQQD------ | |||||||||||||
10 | 2iv9A | 0.11 | 0.06 | 2.05 | 0.64 | HHsearch | ----------------------------------MAPGYVAP-KAVWLPAVKA-KGL--EISGTFTHR--QGHIYMEMNFTNKALQHMT-DFA--IQFNKNSFGVIPS-------TPLAITPLMPNQSIDVSLPLNTLGPVMMLNNLQVAVVFYFSCLIPLNVLFVEGKMERQVFLATWKDI-PNE--------NELQFQI-KE-----C----------H-LNADTVSSKLQNNNVYTI------------------------AKRNVE-------------G-----------------------QDMLYQSLKLTNGIWILA---ELRIQPG---N--PNYTLSLKCRAPEVSQYIYQVYDSILKN----------------------------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |