Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | NLHKLLPNHLMETLYSYKSEEDKKKCENPELSGLERILARHQLPKEINLTPKPNRMPPWKRKIINNVTDGWKKCHLLKRNMKEPPMSTIVVRWLKKNMQPTEDLKSVICRLSAFGPIQSVTVCGRQSAIVAFKDMTSACNAVSAFQSRTPGTMFQCSWQQRFMSKD |
1 | 2adcA | 0.13 | 0.13 | 4.36 | 1.17 | Neff-PPAS | | -PERVTPQSLFILFGVYGDQLAMSHLNGHKLHG-KPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSV----SEEDLKVLFSSNGVVKGFKFFDRKMALIQMGSVEEAVQALIDLHNHDLGHHLRVSFSKSTI--- |
2 | 3s01A | 0.10 | 0.10 | 3.57 | 0.88 | SPARKS-K | | GLDSKNCDRVFNVFCLYGNVEKKPGAADGYADRAITHLNNNFFQKNVCVSPAIPGQSYGLEDGSCSYKDRFSTPEQAAKNRIQHPSNVLHFFNAPLE----VTEENFFEICDELGRPTSVKVFRSSSGLLEWDSKSDALETLGFLPNGPYPYTLKLCFSTAQHAS- |
3 | 3r27A | 0.27 | 0.12 | 3.69 | 0.81 | FFAS-3D | | ---------------------------------------------------------------------------------KTPASPVVHIR----GLIDGVVEADLVEALQEFGPISYVVVMKKRQALVEFEDVLGACNAVNYAADNQAGHPAFVNY-------- |
4 | 2i38A | 0.17 | 0.14 | 4.55 | 0.61 | HHpred | | --------------KTLKGE---TTTEAVDAATAEKVFKQYANDNGVDGEWTYDDAT--KTFTVTEGSHHHHHHMH---RDSCPLDCKVYVG----NLGNNGNKTELERAFGYYGPLRSVWVAPPGFAFVEFEDPRDAADAVRDLDGRTCGCRVRVELSNG----- |
5 | 2i2yA | 0.20 | 0.17 | 5.39 | 0.95 | MUSTER | | NGKTLKGETTTE----AVDAATAEK-------VFKQYANDNGVDGEWTYDDATKTFT---------VTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK----TELERAFGYYGPLRSVWVAPPGFAFVEFEDPRDAADAVRELDGRTLGCRVRVELSN---GEK |
6 | 4p6qA | 0.16 | 0.07 | 2.42 | 0.97 | CNFpred | | -------------------------------------------------------------------------------------TRTLFIGNLE----KTTTYHDLRNIFQRFGEIVDIDIKKPQYAFLQYCDIASVCKAIKKMDGEYLNNRLKLGFGKSMPTNC |
7 | 2d9oA | 0.13 | 0.07 | 2.49 | 0.50 | HHsearch-2 | | ----------------------------------------------------------------------------GSSGSSGQGTPKLKLKWKCKKSKGGYSKDVLLRLLQKYGEVLNLVLSKPGTAVVEFATVKAAELAVQNEVGLV-DNPLKISWLEGQPQDA |
8 | 2i2yA | 0.20 | 0.15 | 4.84 | 1.17 | Neff-PPAS | | ----------------AVDAATAEK-------VFKQYANDNGVDGEWTYDDATK---------TFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK----TELERAFGYYGPLRSVWVAPPGFAFVEFEDPRDAADAVRELDGRTLGCRVRVELS-NGEKR- |
9 | 2d9oA | 0.14 | 0.07 | 2.48 | 0.76 | HHsearch | | ----------------------------------------------------------------------------GSSGSSGQGTPKLKLKWKCKKSKGGYSKDVLLRLLQKYGEVLNLVLSKPGTAVVEFATVKAAELAVQNEVGLV-DNPLKISWLEGQPQD- |
10 | 2adcA | 0.14 | 0.13 | 4.52 | 0.99 | SP3 | | NLNPERPQSLFILFGVYADGNQAQLANGHKLHG-KPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSV----SEEDLKVLFSSNGVVKGFKFFDRKMALIQMGSVEEAVQALIDLHNHGENHHLRVSFKSTI---- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|