Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | ASGIYQGVSGLFGEDNVRALQKFFSRLTERFVNGVDVLMDTFWRIWTDLLDVLGIDASNLTHYFSPAAIANNPTRALLLIGAILLAYWFLSLFLGFFFYLLHMLFGRFFWIARVALFTLSCVYILQKYEGDPEHAVLPLCFVVAVYFMTGPVGFYWRRNSNSSLEEKMDHLDSQIRLLNIRL |
1 | 5cwpA | 0.08 | 0.08 | 3.08 | 0.84 | SPARKS-K | | IERAKEAAERAQERELARELKRLAQEAAEEVKRDVNEALKLIVEAIEAAVRALEATGDPEVRELARELVRLAVEAAEEVQRDVNEALKLIVEAIEAAVRALEAAERTARELVRLAVEAAEEVQRNPSSEEVNEALKKIVKAIQEAVESLREAEESGDPEKREKARERVREAVERAEEVQRDP |
2 | 4p1nA | 0.11 | 0.10 | 3.59 | 1.07 | FFAS-3D | | -SNITPFVESL--SAKAFVMYSFAEMKFSQIMESLLLYLKSL-TILASSMKLTSKWWYENESKNCTLKLNILVQWIRDRFNECLDKAEFLRLKLHTLNQSEDPQVEKLIY--DRALDISRNAARLEMEGNYNTCELAYATSLWMLEILL---------DEHLSDESDKEMIRKYVSSIANRL |
3 | 4cj9A2 | 0.19 | 0.07 | 2.31 | 0.29 | HHpred | | ----------IGGAQALQAVLSLGPDIVKIAGNGGAQALQAVLDLELTLV-E---------HGFSQPDIVRITGQALQ----AVLALELTLRER---------------------------------------------------------------------------------------- |
4 | 3mnlA | 0.14 | 0.14 | 4.68 | 0.67 | MUSTER | | SEAQRERRKRIL---TMAIASKGYEAVMRAVADRADVAVGTLYRYKVHLLVSALGRESRIDAKTDRSAVAGATPFRLNFMVGKLNRAMQRNPLLTEAMTRAYVFADASAASEVDQVEKLIDSMFARAMAGEPTEDQYHIARVISDVWLSNLLAWLTRR---ASATDVSKRLDLAVRLLIGDQ |
5 | 4he8F | 0.14 | 0.12 | 3.95 | 0.83 | CNFpred | | ------PVSALIHAATMVTAGVYLIARSSFLYSVLPDVSYAIAVVGLLTAAYGALSA----------FGQTDIKKIVAYSTISQLGYMFLAAGVGAYWVALFHVFTHAFFKALLFLASGSVIHALGGEQDVRKMGGLRWHALIGALALGGLPL--------------LSGFWSKDAILAATL |
6 | 3swyA | 0.38 | 0.04 | 1.30 | 0.55 | HHsearch-2 | | -----------------------------------------------------------------------------------------------------------------------------------------------------------------GALEEKVEQLGSSLDTLQTRF |
7 | 5cwmA | 0.13 | 0.13 | 4.40 | 0.86 | Neff-PPAS | | AREAKKVLEQAEKEGDPEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRV-LELAEKQGDPEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELAEKQGDPEVARRAVELVKRVAELLERIARESGKERAERVREEARELQERVKELRER- |
8 | 4pndA | 0.07 | 0.01 | 0.45 | 0.52 | HHsearch | | ----------------------------------------------------------------------------------------------------------------------------------------------------------GNILQKIENILKKIENILWKIENILQK- |
9 | 5xjjA2 | 0.10 | 0.09 | 3.26 | 0.62 | SP3 | | AAAVSTRVSNNLGAGNPQVARVSVLAGLCLWLVESAFFSILLFTFRNIIGYAFSNS----------KEVVDYVADLSPLLCLSFILDGFTAVLNGVARGSGWQHIGAWNNIFSYYLVGAPVGVYLAFRHDL-NGKGLWCGVVIGSTVQATVLAIVTASMN----------WKEQAEKARKRI |
10 | 5cwmA | 0.14 | 0.14 | 4.85 | 0.91 | PROSPECTOR2 | | DKRVEKLVKEAESEEDLEKALRTAEEAAREAKKVLEQAPEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELVELVVRVAELLLRIALERALRVAEEAARLAKRVLELAEKQGDPEVARRAVELVKRVAELLERIARESGSERAERVREEARELQERVKELRER- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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