Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | GRRKVHYLFPDGKEMAEEYEDETSELLVRKWRVKSALGALGQWQIEVGEPASHGAGNLGPELIKESNANPIFMRKDTKMSFQWRIRNLPYPKDVYTVCVDQKERCVVIRTSNKKYYKKFSIPDLDRYQLPLDDSLLSFAHANCTLIISYQKPKEVLVAESELQKELKKVKTA |
1 | 5edfA | 0.13 | 0.11 | 3.81 | 0.87 | SPARKS-K | | IEISVYYKKTDQGWVLEPYNQQNKAHFIQFLRDG----LDSVDDIVIRKDACSLSTTGERYGVKKPSAY--------PEYEAYEDKRNPYF--HEFYYIKKGENIITHRNNRIN---------------QTEEDSYSTSVGSCIFTVQYQQLQELVGYHQQVEQLVQSFVNN |
2 | 4qvzA | 0.15 | 0.13 | 4.50 | 0.56 | FFAS-3D | | ---VVEVRGSNGAFYKAFVKDVHEDSITVAFENNWQ----PDRQIPFHDPPVGYNKDINESDEVE-----VYSRANEKEPCCWKVRMI--KGEFYVIEVTIER----LRSVNPNHKIKLDVPEDLRQMCAKEAAHVTYDPENYQLVILSINEVTSKRAHMLIDMHFRSLRT- |
3 | 1shsA | 0.14 | 0.07 | 2.40 | 0.47 | HHpred | | -----------------------------------------------------------TGIQISGKGFMPISIIEGDQHIKVIAW-LPVNKEDIILNAVG--DTLEIRTESEEIYRTIKLPA------TVKEENASAKFENGVLSVILPKAESSI---------------- |
4 | 6c0bA2 | 0.13 | 0.11 | 3.85 | 0.70 | MUSTER | | LETNYTLYVGNRQNMIVEPNYDSSTVINFSQKYLYGIDSCVN-KVVI--SPNIYTDEINITPVYETNNTPEVIVLDANEKINVNINDLS---IRYVWSNDGND-FILMSTENKVSQVKIRFVNV------FKDKTL-----ANKLSFNFSDKQDV-----PVSEIILSFTPS |
5 | 2eadA | 0.09 | 0.08 | 2.90 | 0.80 | CNFpred | | NWGDIYLDYG-VTEYRRDLNLS-KGKADVTFKHD-----GVTYTREYFASN----------------DNVMVARLTAAGKLNFNVSMPTN-YSKTGETTTVKGDTLTVKGALLLYNSQIKVVGEGTLSEGSDGASLKVSDKAVTLYIAAAT-AEVNTRVAKVVQDAANKGYT |
6 | 4rzkA | 0.18 | 0.09 | 2.85 | 0.72 | HHsearch-2 | | --------------------------------------------------------------MISEEREPLADVIEKGDEIKVVAEVPGVNKEDIKVKVTNGGKKLVITAKDRQYYKEIDLPA------EVDEKAAKANFKNGVLEITLKKKA------------------- |
7 | 2k5gA | 0.08 | 0.08 | 2.94 | 0.70 | Neff-PPAS | | ---------LDAQSIRFERLLPADADKRARWLAGGELGQTFELHFNHAALTAETAPARYAQYDRPIVARHTLLRCEPPRVLALTWGGGAGEAPEVLFELSEAGEQVRLVLTHTRLADRAAMLDVAG--------GWHAHLAVLAGKLAGQAPPPFWTTLAQAEQDYEQRLLE |
8 | 4rzkA | 0.18 | 0.09 | 2.85 | 0.69 | HHsearch | | --------------------------------------------------------------MISEEREPLADVIEKGDEIKVVAEVPGVNKEDIKVKVTNGGKKLVITAKDRQYYKEIDLPA------EVDEKAAKANFKNGVLEITLKKKA------------------- |
9 | 2bolA2 | 0.14 | 0.08 | 2.76 | 0.75 | SP3 | | --------------------------------------------------IQPSEVQERQLAVKNKEGLEIVTAEDGSKKIHLELKVDPFAPKDVKVWAKGNKVYVHGVTGHREFYKAFVTPE------VVDASKTQAEIVDGLMVVEAPLFK------------------- |
10 | 2vbkA4 | 0.15 | 0.13 | 4.52 | 0.62 | PROSPECTOR2 | | DCLDLHMEQLDGSTGVVIENVNGGFSFSNSWIAADADGTEQFTGIYFRTPTSTQSHKIVSGVHINTANKN-----TAANNQSIAIEQSAIFVFVSGCTLTGDEWAVNIVDINECSFDKCIFNKPLRYLRSGG---VSVTDCYLAGITEVQKP-------EGRYNTYRGCSGV |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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