Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | AWSTHSVPNFSGAPCGNFISPFTCPVASRFPYGSLHRSCSGCTLPVNSPPSTTEMQLRRVLHDIRSSLQNLSQHSVMRGSDGSASGFSMQRSSVLPLYENTFQELQIMRRSLNLFRTQMMDLELSMLRQQTMVYQHLTEDERYEADQLQGLRNSVRMELQELELQLDERLLALEEQL |
1 | 4uosA | 0.06 | 0.06 | 2.51 | 0.81 | SPARKS-K | | -GDNEEVKKMLEKMIEEIKKMLEKAIKKVKEMLEKMIKEIKKMLENGEDSEKILKKAKEMAEKILKMVIELAEKILKKAKEMAEKILKKVKELGVDNEEMLEKMIEEIKKMLEKAIKKVKEMLEKMIKEIKKMLENGEDS-EKILKKAKEMAEKILKMVIELAEKILKKAKEMAEKI |
2 | 4gfqA2 | 0.09 | 0.06 | 2.14 | 0.76 | FFAS-3D | | --------------------------------------------------AMGQQVLKFSNEKMEKAVAAYS--------------RELATVRAGALTEERRRDLKVVKKYAEEAKVAVRNVRRDGNDKKLEKAGEITEDDLRGYEDIQKETDKYIAKVDEIAKNKEKEIMEV---- |
3 | 6nctB | 0.18 | 0.12 | 4.05 | 0.33 | HHpred | | -------------------------YNPKLD--YPVSKYQ-------QDEDNIEA-VGKKLHEYNTQFQEKSREY---------DR-------LYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQCQTQERY-SKEYIEKEIHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYRE-- |
4 | 1eq1A | 0.11 | 0.10 | 3.68 | 0.89 | MUSTER | | -----DAPA-GGNAFEEMEKHAK--FQKTFSEQFNSLVNSKNTQDFNKALKDGSDSVLQQLSAFSSSLQGAISDANGKAKEALEQARQNVEKTAEELRKAHPDVEKEANAFKDKLQAAVQTTVQESQKLAKEVASNMEETNKKLAPKIKQAYDDFVKHAEEVQKKLHEAAT--KQ-- |
5 | 1fioA | 0.14 | 0.08 | 2.89 | 0.59 | CNFpred | | ----------------------------------------------------KISQINRDLDKYDHTINQVDSLHKRLLTE------------------VNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGI-HDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQA |
6 | 6f1tX2 | 0.14 | 0.06 | 1.94 | 0.63 | HHsearch-2 | | ---------------------------------------------------------------------------------------------------QHIIRLESLQAEIKMLSDRKRELEHRLSATLEENDLL-----QGTVEELQDRVLILERQGHDKDLQLHQSQLQLQGGG |
7 | 2yfaA2 | 0.08 | 0.06 | 2.20 | 0.76 | Neff-PPAS | | --------------------------------------------------MGDIGQLNKDLTDLRIARLQYMIAAANTLAKLDAFSKQQAYLATTFKSPENVKLLGELGDTISAYKLSLNKMRQGYDATRAARVSMAVANITTSRAEMTVQGADIVKRSDALYQIQLER-------- |
8 | 6f1tX2 | 0.15 | 0.06 | 2.08 | 0.75 | HHsearch | | ---------------------------------------------------------------------------------------------------QHIIRLESLQAEIKMLSDRKRELEHRLSATLEENDLL-----QGTVEELQDRVLILERQGHDKDLQLHQSQLELQEG- |
9 | 3p0uA | 0.12 | 0.11 | 3.78 | 0.71 | SP3 | | --------RDQSTPIIEVEGPL------LSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPACAQVMSLSTILAAVNNSRIKQVMEHIWKLQEFCNSMAKLD-----IDGYEYAYLKAIVLFSPDHPGLT--STSQIEKFQEAAQMELQDYVQATTYRLARILVRL |
10 | 2pmsC | 0.13 | 0.08 | 2.75 | 0.71 | PROSPECTOR2 | | ----------------------------------------------GSHMDAEEVAPQAKIAELENQVHRLEQ---------------ELKEIDEAPLQSKLDAKKAKLSKLEELSDKIDELDAEIAKLEDQLKAAEEEDYFKE--GLEKTIAAKKAELEKTEADLKKAV-----NE |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|