Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | VPARLLDQEFGHGRVTRHEEVDLPATLTHEPTRRFLRETGLPEAAVVFHADTDGPLRTLTEFTTGEPCDDRSGRPAPSADALPAHSDHLIRLGHLVEDNSLVVDGRTGAVLTYSAPDATLHALNTDVSTLAFTLWLLHHERTIDEHLSRELTTDAYDQLAAAMIQTLASVDPTAAAPATEWHYWTELFQD |
1 | 5j1bA | 0.08 | 0.07 | 2.91 | 0.97 | SPARKS-K | | HIDFWTSEHNPDATLSPCTQNDITHVSFPNPVKASFKIHGQEDTYGFQLMTLDQVVAMTQAWRLNKRSPDQKSIPPNAVQPVY-AHPAWIPLITDNAGNHIGVDGKYAQIITFGRDFDTKFVIAENWGEFLLSFANDLEAGNVFRDKKSNGPI---QDYFEVLKRRTWIKYQLERPHRD----------- |
2 | 5j1bA | 0.11 | 0.11 | 3.76 | 0.71 | FFAS-3D | | --VSETLLAWRHIDTSEHNPDTLSDPCTQNDITHAEEDLEFPNPVKASFKIHDGQEDTRNVAKNLNKRSPDQKSIPPNAVQPVYAHPAWIPLITDNAGNHIGVDGKYAQIITFGRDFDTKFVIAENWGEFLLFANDLEAGNWYLVDGEDKKSNGPIQDYFEVLKRRTWI-------------KYQLERRD |
3 | 5j1bA | 0.12 | 0.11 | 3.73 | 0.45 | HHpred | | --DFWTSEHNPDATLDPCTQNDITEVSFPNPVKASFKIHGQEDTSGLFQLMT---LDQVVAMTWRNVAKKRSPDSIPPNVQPVYAHPAWIPLITDNAGNHIGVDLAPAQIITFGRDFDTKFVIAENWGEFLLSFANDLEAGNWLVGFDKKPIQDYFEVLKRRTWIKYQLERPHR---------------- |
4 | 3tnfB | 0.09 | 0.08 | 3.16 | 0.62 | MUSTER | | LSLSEINEKMEASKDSEKLTQLMEKHKGDEKTVQSLQRE---------HHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSLKDAH-----LAINKDQEVV---HEGQFYLLQKGQWDA--IKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNL--IMSTDPKENEEATKLLHK |
5 | 3owoA | 0.09 | 0.08 | 3.05 | 0.67 | CNFpred | | --VKQVADLLKGINSAVYDGVPNPTVTAVLEGLKILKDNN---SDFVISLGGG-SPHDCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSINTTA-RFCIITDEVHVKMAIVDR-TPMVSVNDP-AATGMDALTHAFEAYSST------AATPITDACALKAASMIAKNLKTACDNGKDMPAREAMAYA |
6 | 2prvA | 0.10 | 0.07 | 2.55 | 0.64 | HHsearch-2 | | KVENFINENKQNAIFEGASHENIGQCDLPNSYKWFLEKYGAGGLFGVLGYNFD-H-ASVVNRTNEY-------------KEHYGLTDGLVVIED-VDYFAYCLDTNKCPVVEWDRVIGYQDTVADSFIEFFYNKIQEAKDDWDDEDWDD----------------------------------------- |
7 | 5j1bA | 0.10 | 0.09 | 3.32 | 0.79 | Neff-PPAS | | ---PDLNATLSDP----CTQNDITEVSFPNPVKASFKIHGQEDTSGLFYGFQLMTLDQVVAMTQANKRSPDQKSIPPNAVQPVYAHPAWIPLITDNAGNHIGVDGKYAQIITFGRDFDTKFVIAENWGEFLLSFANDLEAGNWYLVDGEKKSNGPIQDYFEVLKRRTWIKYQLERPHRD----------- |
8 | 2prvA | 0.09 | 0.06 | 2.41 | 0.88 | HHsearch | | GIENFINENKQNAIFEGASHENIGQCDLPNSYKWFLEKYGAGGLFGVLGYNFD-H-ASVVNRTNEY-------------KEHYGLTDGLVVIED-VDYFAYCLDTNKCPVVEWDRVIGYQDTVADSFIEFFYNKIQEAKDDWDEEDWDD----------------------------------------- |
9 | 5j1bA | 0.09 | 0.08 | 3.18 | 0.71 | SP3 | | I-DFWTSEHNPD------LNATLSDPCTQNDITHAEEDLEFPNPEDTSGLFYGFQLMTLDQVVAMNKRSPDQKSIPPNAVQPVYAHPAWIPLITDNAGNHIGVDGKYAQIITFGRDFDTKFVIAENWGEFLLSFANDLEAGNWYLVDGEKKSNGPIQDYFEVLKRRTWIKYQLERPHRD----------- |
10 | 5j1bA | 0.12 | 0.11 | 3.88 | 0.78 | PROSPECTOR2 | | NDVSETLLAWSDP----CTQNDITHVSFPNPVKASFKIHGQEDTSGLFYGFQLMTLDQVVAMTQANKRSPDQKSIPPNAVQPVYAHPAWIPLITDNAGNHIGVDGKYAQIITFGRDFDTKFVIAENWGEFLLSFANDLEAGNWRDKKSNGPIQDYFEVLKRRTWIKYQLERPH---------------RD |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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