>PF14175 (307 residues) LSVFRSADTAQHFLQQCYKQQGRDDAVQRSYTNCYPFLYYLEHGQNFYAAAQQAPLSIKP VLLFYGMVQLLKACLLTVDPDYPESTSVLAHGVSTRKRKKQGYEFLDDEVKVQKNGLFTH FSEKMFHVKQEAGEKFRMGTLLQRICELHETFFSLNGRKKPLSLPIVHTASPSMLAIPKT ILDHYHMTLPRFVQYIGEEGQGRQLVFMKEEGEFLYFETAMPLSSVGEGPFLFHLNGTYY IPTKKEKIFTLPEIHAHYLLLYNLSMISRYETEWWSELLHSYSSKAYIFILQFLSVSAEK VPLLLNE |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LSVFRSADTAQHFLQQCYKQQGRDDAVQRSYTNCYPFLYYLEHGQNFYAAAQQAPLSIKPVLLFYGMVQLLKACLLTVDPDYPESTSVLAHGVSTRKRKKQGYEFLDDEVKVQKNGLFTHFSEKMFHVKQEAGEKFRMGTLLQRICELHETFFSLNGRKKPLSLPIVHTASPSMLAIPKTILDHYHMTLPRFVQYIGEEGQGRQLVFMKEEGEFLYFETAMPLSSVGEGPFLFHLNGTYYIPTKKEKIFTLPEIHAHYLLLYNLSMISRYETEWWSELLHSYSSKAYIFILQFLSVSAEKVPLLLNE | |||||||||||||||||||
1 | 2gafD | 0.09 | 0.08 | 3.02 | 0.71 | SPARKS-K | IGKLFTIIELQSVLVTTYTDIAPTSMEELARDMLNSMNNVNKLMEEYLRRHNKSCICYGSYSLYYGFLIDLAFLIKFITGNNSKIPYLRNY-MVIKDENDNPKIFIDNIYIVD---PTFQLLNMIKMFSQIDREDLDPEKFNARMATMLEYVRYTHGKRNNMPMKCIIDENNRIVTVTTKDYFSFKLDENVLSSDILDLNADTSCDFESVTNSVYLIH--------DNIMYTYF--SNTILLSDKGKVHEISRGLCAHILLYQMLT-------------SGEYKQCLSDLLNSMMNRDKIPIYSHTE | |||||||||||||
2 | 4nqfA | 0.15 | 0.06 | 1.96 | 0.73 | FFAS-3D | -------------------------SPADALRVAEDHFLRHPDARDFADVAKKGNLHLAAFNLHQAVETAYNCYLLTLTNYSPA-----SHNKDIWPRDRQRFT------------TWYNINEAYVKARYSKRFEVSLTWLQERTAELHKLVETLCREH---------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
3 | 3peuB | 0.11 | 0.07 | 2.73 | 0.32 | HHpred | -----LLSRHKRKINPKFGQL--TNSNQQLFKIQNELTQLINDTK------------GDSLAYHWILNFIAKAVVRQAET------E----------------------VRVKPESALP-LGKLT-------------LYLLVQFPELQELFARLVKKCP-FVIGFTCEIDT------EKGRQN-GWDNTSYDERLSLFAIITRLQLPQ-----------EFI-TTTSHPFPIALSWHILARICNTPLNLITNILGSWWDAAAVQFLQAY-GNQASKLLILEKYVGAARLRILLEAWQN-------- | |||||||||||||
4 | 3tnfB | 0.09 | 0.09 | 3.46 | 0.74 | MUSTER | EKKLDKLERQGKDLEDKYKTYELTDSEELSLSEINEKMEAFSKDSEKLTQLMEKHTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQEVVEHEGQ-PAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNL-IMSTDPKENEEATKLLHKHNGLNLKLANLQDMLAVHRKEKSFFNEKGEKDQQLFNLGGKFYPIHKEQKILEKDGKFYLLKQGEDWESIKSPEKQKKAEHDFHKLQYETPMTVKKLVHHNKGLETTIHKERVEETKQQLEDNGKE | |||||||||||||
5 | 4z7iA | 0.09 | 0.08 | 2.93 | 0.73 | CNFpred | -------EGFATFMEYFSLEKIFKELS-SYEDFLDARFKTMKKDSLSHPISSSVQSSEQIEEMFDSLSYFKGSSLLLM--------------LKTYL----------------SEDVFQHAVVLYLHNHS--YASIQSDDLWDSFNE-KRMMKTWTL---KGFPLVTVQKKGKELFIQQER---FFLNM-LWHIPLSYVTEGSKYQSVSLDKKSGVINLTE-----EVLWVKVNINGYYIVHYAD-NPYVLSDKDRANLINNIFELAGLGPLKRAFDLINYLNENHTAPITEALFQTDLIYNLLEKL | |||||||||||||
6 | 1vt4I | 0.13 | 0.12 | 4.10 | 0.57 | HHsearch-2 | LRLFKQEEMVQKFVEEVL-RINYKSPIKTEQRQSMMTRMYIEQRDRLYNDNQFAKYNVSRLQPYL-KL--RQALLELRPAKNVLIDGVLGSGKTWVALDVCSMDFKIFWLNLCNEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIAELRRLLKSKP-YENCLLVLLNVQNNSCKILLRFKILDHMTLTPDEVKSLLDGLATWDNWKFPPSPESTISIPSENEYRIVDHKTFDSDDLDQYFLEQKNASGSILN---TLQQLKFYKPYICDNDPKYERL------------VNAILDFLPKIEALMAED | |||||||||||||
7 | 3tnfB | 0.09 | 0.08 | 3.27 | 0.87 | Neff-PPAS | EKKLDKLERQGKDLEDKYKTYELTDSEELSLSEINEKMEAFSKDSEKLTQLMEKHTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQEVVEHEGALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNLIMST-----DPKENEEATKLLHKHNGLNLKLANLQDMLAVHRKEKSFFNEKGEKDQQLFNLGGKFYPIHKEQKILEKDGKFYLLKQGEDWESIKSPEKQKKAEHDFHKLQYETPMTVKKLVHHNKGLETTIHKERVEETKQQLEDNGKE | |||||||||||||
8 | 3o10A | 0.11 | 0.05 | 1.65 | 0.65 | HHsearch | ---------------------GSV-------GNPVEARRWLRQARANFSAARNNANEWVCFKCYLSTKLALIAADYAVRGKS-----DKDVKPTALAQKI-E-EY-SQQ--L-E--GLTNDVHTLEAYGVDLKTR----------------YPDLLP-FP--QIPNDRF--------TSEVAR---VETACIIIKLENFQQ---------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 3fosA | 0.09 | 0.06 | 2.12 | 0.65 | SP3 | -------------EKDTIAAEHKQEASVLLNLHRNKINYLIGETAR-TSLSIAIDRP-----------------------VDIKKQSIL-------EKTFDSEPRFSGLYFLNAKG-------DVTASTTELKTKVNLAD--------RSFFIKAKETKKTVISDSYSSRITGIFTICVPVLDSKRIQIDYLKNLINLLSPDVYIEVVNQDGKIFASGQASHAEDQKPVSGYLDDISWNKVYPNPVTIEE--------------------------------------------------------- | |||||||||||||
10 | 3tnfB | 0.10 | 0.09 | 3.52 | 0.93 | PROSPECTOR2 | LDKLDKLERQGKDLEDKYKEKLLTDSEELSLSEINEKMEAFSKDSEKLTQLMEKHKGDEKTVQHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQEVVEHEGQFYLLQKGQWDAIKNNPAALEIHKLSLEMEKQLETINNLIMSTDP--------KENEEATKLLHKHNGLNLKLANLQDMLAVHRKEKSFFNEKGEKDQQLFNLGGKFYPIHKEQKILEKDGKFYLLKQGEDWESIKDSPEKQKAEHDFHKLQYETPMTVKKLVHHNKGLETTIHKERVEETKQQLEDNISK | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |