>PF14121 (616 residues) LYMWRIKNQLGDRTMIPADTAYHHFQNTNLTDGLTGHYNYLANMGSPRMSRIFFDRRDPE PTIFMEPFSSFFIRPTEFNFTNSNVPYTNLTYHKAGNKVNGEERFKSYFSVNVNKRLAFG FNIDYLYGRGYYNNQSTSHFNAAFFGSYIGDRYQMQAIYSNNYLKTNENGGIEDDRYITA PEEMAQGQREYESTNIPTILSATTNRNHDFYVFLTQRYNLGFKRDIPQAENDTMPAKQEF VPVTSFIHTVQVERARHSFHSEDDVKDYYQNTYLEPDNPLVKDSTTYIGIKNTVGIALLE GFNKYAKAGLTAFASYKISKYTLMNLEGIGNDKYNENEIFVGGELSKREGNVLHYHAIGE VGLGGKAIGQFNVKGDIDLNFPLWKDTVSLIARGEVSNKLAPFYMRHYHSKHFWWDNDMD KEFRTRIEGELSIARWRTKLKAGVENIKNYTYFNQQALPEQKSGSLQVLSASLNQDFKLG IFHLDNEVTWQKSSDQTVLPLPDLSLYHNFYMQFKLAKKVLSVQLGADLRYFTKYNAPAY MPAIQNFHLQPTDDQVEIGGYPIVNVYANLHLKRTRFYVMMYHVNQGMSRPNYFLSPHYP INPRVLKFGLSWNFYD |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 580 600 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LYMWRIKNQLGDRTMIPADTAYHHFQNTNLTDGLTGHYNYLANMGSPRMSRIFFDRRDPEPTIFMEPFSSFFIRPTEFNFTNSNVPYTNLTYHKAGNKVNGEERFKSYFSVNVNKRLAFGFNIDYLYGRGYYNNQSTSHFNAAFFGSYIGDRYQMQAIYSNNYLKTNENGGIEDDRYITAPEEMAQGQREYESTNIPTILSATTNRNHDFYVFLTQRYNLGFKRDIPQAENDTMPAKQEFVPVTSFIHTVQVERARHSFHSEDDVKDYYQNTYLEPDNPLVKDSTTYIGIKNTVGIALLEGFNKYAKAGLTAFASYKISKYTLMNLEGIGNDKYNENEIFVGGELSKREGNVLHYHAIGEVGLGGKAIGQFNVKGDIDLNFPLWKDTVSLIARGEVSNKLAPFYMRHYHSKHFWWDNDMDKEFRTRIEGELSIARWRTKLKAGVENIKNYTYFNQQALPEQKSGSLQVLSASLNQDFKLGIFHLDNEVTWQKSSDQTVLPLPDLSLYHNFYMQFKLAKKVLSVQLGADLRYFTKYNAPAYMPAIQNFHLQPTDDQVEIGGYPIVNVYANLHLKRTRFYVMMYHVNQGMSRPNYFLSPHYPINPRVLKFGLSWNFYD | |||||||||||||||||||
1 | 6e4vA | 0.09 | 0.08 | 3.16 | 1.93 | SPARKS-K | DIPQSVTIVSQQRMEDQQLQTLGEVMENTLKSQADSDRALYYSRGFQIDNYGIPTYFESRWNLGDALSDMALF--ERVLMTGTGNPSAAINMVRAEYGSWNKERYVADLQSPLTEKIRARIVGGYQNNDSWLDRYNSEKTFFSGIVDADLGTLSAGYEYQRIDVNSPTWGGLPR-WNTDGS------SNSYDRARSTA-PDWAYNDKEINKVFMTLKQQFADT-----------WQATLNATHSEVEFDSKMMYVDAYVNKADGMLVGPYSNYGPGFDYVGGTGWNSGKRKVDALDLFADGSYELRQHNLMFGGSYSKQNNRYFSSWANLAQDDTTHMKSLYAATRVTLADPLHLILGARYTNWRVDTLEKNHTTPYAGLVFDINDNWSTYASYTSIFQPQ---------NDRDSGKYLAPITGNNYELGLKSDRLTTTLAIFRIEQDNVAQSTNGETAYKAVDGTVSKGVEFELNGAITNWQLTFGATRYIAEDNENPNLPRTTVKMFTSYRLPVMPE---LTVGGGVNWQNRVYTDTVTP--------YGTFRAEQGSYALVDLFTRYQVTNFSLQGNVNN----LFDKTYDTNVEVYGTPRNFSITGTYQF-- | |||||||||||||
2 | 1xkwA | 0.10 | 0.08 | 3.09 | 1.41 | FFAS-3D | --------------------------------------------GFKVDSFELDGVPALLGNTASSPQDMAIY--ERVEILRRKRPAASTTLSAGRWDRY-RAEVDVGGPLSASGNVRGRAVAAYEDRDYFYDVADQGTRLLYGVTEFDSPDTLLTVGAQYQHIDITNMAGV---------PMAKDGSNLGLSRDTYLDVDWDRFKWDTYRAFGSLEQQLGGG--------------------WKGKVSAEYQEADSRLRY-----AGSFGAIDPQTGDGGQFKSIQRSLDANLNGPVRLFGLTHELLGGVTYAQGETRQDTARFLNLTSPGTTTTTQKGLYALGRIKLAEPLTLVVGGRESWWDQDTRQFTPYGGLIWDFARDWSWYVSYAEVYQPPLSPV------------------EGKTYETGIKGELADGRLNLSLAAFRIENNPQEDPDHPGYISGGKVRSQGFELEGTGYLTYWSLSAGYTYTSTGTRYSTFTPRHLLRLWSNYDLPWQDRRWSVGGGL--QAQSD------------YSVDYRGVSMRQGGYALVNMRLGYKIEHWTAAVNVNNL----FDRTYYQSLSRYGEPRSFNVSLRGAF-- | |||||||||||||
3 | 2gskA | 0.11 | 0.09 | 3.18 | 1.30 | HHpred | ------------------SIFIRGTNSHVLVLIDGVRLNLAGVSGSADLSQFPIAVQRVEYIRGPRS-AVYGDAIGGVVNIITTRDETEISAGWGS---NSYQNYDVSTQQQLGDKTRVTLLGDYAHTHGYDVVAYFLSKTLYGALEHNFDAWSGFVRGYGYDNRTNYDAYYSPG-----S------------------PLLDTRKLYSQSWDAGLRYNGELIK-----------------SQLIT----SYSHSKDNYDPHY---GRYDS----S--A-TLDEMKQY--TVQWANNVIVG-----HGSIGAGVDWQKQTTTPGTGY--VEDGYDQRNTGIYLTGLQQV-GDFTFEGAARSDDNSQFGRHGTWQTSAGWEF---IEGYRFIASYGTSYKAPNLGQLY--G---FYGNNLDPEKSKQWEGAFEGLGVNWRISGYRNDVSDLIDYDDHTLKYYNEGKARIKGVEATANFDTGPLTHTVSYDYVDARNTPLLRRAKQQVKYQLDWQL---Y---DFDWGITYQYLGTRYDKDYSSY-----PYQT---VKMGGVSLWDLAVAYPVTHLTVRGKIANLF----DKDYETVYGYQTAGREYTLSGSYTF-- | |||||||||||||
4 | 2gskA | 0.10 | 0.09 | 3.16 | 1.89 | MUSTER | APTTVVTDRWQSTSVNDV--RLPGVDITQNGGSGQLSSIFI---GTNASHVLVL---RLNLAGVSGSADLSQFPIALVNII--TRDEPGTEISAGWG-SNSYQNYDVSTQQQLGDKTRVTLLGDYAHTHGYDVVAYGNTGTLYGALEHNTDAWSGFVRGYGYDNRTN------------YDAYYSPGSPLLD-----------TRKLYSQSWDAGLRYNGEL-----------------------IKSQLITSYSHSKDYNYDPHYGRYDSSAT---------LDEMKQYTVQWANNVIVGH-------GSIGAGVDWQKQTTTPGTGYVEDGYDQRNTGIYLTGLQQVGD-FTFEGAARSDDNSQFGRHGTWQTSAGWEFI---EGYRFIASYGTSYKAPNLGQLYGFYG----NPNLDPEKSKQWEGAFEGLGVNWRISGYRNDVSDLIDYDDHTLKYYNEGKARIKGVEATANFDTGPLTHTVSYDYVDATDTPLLRRAKQQVKYQLDWQLY------DFDWGITYQYLGTRYDKDYS--------SYPYQTVKMGGVSLWDLAVAYPVTHLTVRGKIANL----FDKDYETVYGYQTAGREYTLSGSYTF-- | |||||||||||||
5 | 3rgnA | 0.10 | 0.08 | 2.84 | 3.99 | CNFpred | LSSIFIRG----TNASHVLVLIDGVRLNLAGVSGSADLSQFPIALVQRVEYIRGPR---SAVYGSDAIGGVV-------NIITTRDEPGTEISAGWGS-NSYQNYDVSTQQQLGDKTRVTLLGDYAHTHG-----GFLSKTLYGALEHNFDAWSGFVRGYGYDNRTN------------------------------------TRKLYSQSWDAGLRYNGE------------------LIKSQLITSYSHSKDYNY------------------------SATLDEMKQYTVQWANNVIV----GHGSIGAGVDWQKQTTTPGTGYV--EDGYDQRNTGIYLTGLQQVG-DFTFEGAARSDDNSQFGRHGTCQTSAGWEFI---EGYRFIASYGTSYKAPNLGQLYGF----YGNPNLDPEKSKQWEGAFEGLGVNWRISGYRNDVSDLIDYDDHTLKYYNEGKARIKGVEATANFDTGPLTHTVSYDYVDARNTPLLRRAKQQVKYQLDWQL------YDFDWGITYQYLGTRYDKDY-----------PYQTVKMGGVSLWDLAVAYPVSHLTVRGKIANLFD----KDYETVYGYQTAGREYTLSGSYTF-- | |||||||||||||
6 | 2gskA | 0.10 | 0.09 | 3.17 | 1.49 | HHsearch-2 | VTANRFEQPSTVLPTTVVSTSVNDVLRRLP----GVDITQNGGSGQLSHVLVLIDGVRLNLAGVSGSADLSQFPIALVVNIITTRDETEISAGWGS---NSYQNYDVSTQQQLGDKTRVTLLGDYAHTHGYDVVAGFLSKTLYGALEHNFDAWSGFVRGYGYDNRTNYDAYYSPG----S----------------P---LLDTRKLYSQSWDAGLRYNGEL---------------------IKSQLITSYSHSKDYNYDPHY--GRYD----SS--A-TLDEMK--QYTVQWANNVIVG-----HGSIGAGVDWQKQTTTPGTGY--VEDGYDQRNTGIYLTGLQQV-GDFTFEGAARSDDNSQFGRHGTWQTSAGWEF---IEGYRFIASYGTSYKAPNLGQLY--G--FYGNPNLDPEKSKQWEGAFEGLGVNWRISGYRNDVSDLIDYDDHTLKYYNEGKARIKGVEATANFDTGPLTHTVSYDYVDARNTPLLRRAKQQVKYQLDWQL---Y-D--FDWGITYQYLGTRYDKDYSSY-----PYQT---VKMGGVSLWDLAVAYPVSHLTVRGKIANL----FDKDYETVYGYQTAGREYTLSGSYTF-- | |||||||||||||
7 | 2gskA | 0.09 | 0.08 | 3.00 | 3.39 | Neff-PPAS | -----------------VNDVLRRLPGVDITQNGGSGQLSSIFITNASHVLVLIDGVRLNLAGVSGSADLSQFPIALVVNIITTRDEPGTEISAGWG-SNSYQNYDVSTQQQLGDKTRVTLLGDYAHTHGYDVV-------------------------------------------AYGNTGTQAQTDNDGFLSKTLYGALEHNFTDAWSGFVRGYGYDNRTNYDAYYSPGSPLLDTRKLYSQSWDAGLRYNGELIKSQLITSYSHSKDYNYDPHYGRYDSSATLDEMKQYTVQWANNVIVGH-----GSIGAGVDWQKQTTTPGTGYVEDGYDQRNTGIYLTGLQQVGD-FTFEGAARSDDNSQFGRHGTWQTSAGWEFIE---GYRFIASYGTSYKAPNLGQLYGF----YGNPNLDPEKSKQWEGAFEGLGVNWRISGYRNDVSDLIDYDDHTLKYYNEGKARIKGVEATANFDTGPLTHTVSYDYVDATDTPLLRRAKQQVKYQLDWQLY------DFDWGITYQYLGTRYDKDYS--------SYPYQTVKMGGVSLWDLAVAYPVTHLTVRGKIANL----FDKDYETVYGYQTAGREYTLSGSYTF-- | |||||||||||||
8 | 2gskA | 0.10 | 0.09 | 3.16 | 2.19 | HHsearch | VTANRFPRSTVLAPTTVVSTSVNDVLRRLPG----VDITQNGGSGTNSHVLVLIDGVRLNLAVS-GSADLSQFPIALVQNIITTRDETEISAGWGS---NSYQNYDVSTQQQLGDKTRVTLLGDYAHTHGYDVVAGFLSKTLYGALEHNFDAWSGFVRGYGYDNRTNYDAYYSPG----S----------------P---LLDTRKLYSQSWDAGLRYNGEL---------------------IKSQLITSYSHSKDYNYDPHY--GRYD----S--SA-TLDEMK--QYTVQWANNVIVG-----HGSIGAGVDWQKQTTTPGTGY--VEDGYDQRNTGIYLTGLQQV-GDFTFEGAARSDDNSQFGRHGTWQTSAGWEF---IEGYRFIASYGTSYKAPNLGQLY--G--FYGNPNLDPEKSKQWEGAFEGLGVNWRISGYRNDVSDLIDYDDHTLKYYNEGKARIKGVEATANFDTGPLTHTVSYDYVDARNTPLLRRAKQQVKYQLDWQL---Y-D--FDWGITYQYLGTRYDKDYSSY-----PYQT---VKMGGVSLWDLAVAYPVSHLTVRGKIANL----FDKDYETVYGYQTAGREYTLSGSYTF-- | |||||||||||||
9 | 5fr8A | 0.09 | 0.08 | 3.09 | 2.44 | PROSPECTOR2 | I----------------FVTAEEQVKKLPVRNDGNSATGQRGNNRQIDPINSRNSVRYGWKGERDTRGDSNWVPAEAIKVTNETHGSVEFYTQPEDSKEGSSNRVGFNVSGPLKDVLSYRLYGNYNKTEADAGREGVKNKDISGRLAWQTDQQTVLLDISSSKQGNIYSGDSQLNANAEADAILSQLIGKET------------NTMYRDSYALTHEGDWSW-----------------------GKSKLVAQYDKTHNKRLPEGLAGSVEGKINNLDDKATSRLETLRFNGEANIPFEYYL----PQVLTVGTEWVEDRFKDNVSTTQGKDKMESRIASAYIEDNLKVTDSTDVVLGLRFDDHSKSGSNWSPSLNITQKL---NDYFTLKGGVAKAYKAPNMYQNAEGYNGNGCPANIESRCLLQLGIQFQKDIVNASLTWFRNDYKDKIVAGTHVVGTVDVTNTKWNILRGSLGLDFGDIRWTNNFTYMMQTGNPLSLVPIYTINSIFDYD---ITDQLDV--NFVFTQYGRQKSRQFAENRLESGIGSGLKPSTVKSYSTAGINVGYKFDQISTRVGVSNLDKQILRDSNSISQTYNEPGRAYYASLKYSF-- | |||||||||||||
10 | 3ddrA | 0.10 | 0.07 | 2.73 | 2.04 | SAM | --------------------------------------------------------------------------------FNTVELGGKLHASTGD---NGTHIGSGILALG-NETGDILLAASERHLGDYWPGNHYRMHSRLAKVGWNLANQRLQLSYLQTQTASPIAGTLTNLG---T-----------RPPYELGWKRTGYTDVMARNAAFDYSLAPEDVD------------------WLDFQAKLYYVDTQDDSDTYSTS-------SL------LDNGYATRTRLRTYGAQAQNTFSLAPDFRANYGLEFYYDKATSDSSRQGVTPAGNRSVASLFANLTYDYDGWLTLEGGLRYDRYRLRGQT-KLSPTLAVAVR-PVEWLELYTTYGKSWRPPAITETLTNGSAQYPNPFLQPERSRAWEVGFNVQRLVAKVAYFDTKVDNYINLAIDRAAYVNLSKTRFRGLEYQLNYDAGVFYADLTYTHMIGKNEFAAYLPGDRGSVTLGGRAFD----RKLDAGVTVRFAPGYQDSSVPS-----NYPYL---ADWPKYTLFDLYASYKLDSLTLRGSVENL----TNRAYVVSYGTLGRGRTVQGGVEYRF-- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |