Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | LGVAVSMVMYEKRHLTTGSIVVPGYIAVFIIHPLVILATFINAFITYAFVNLFLRRYFLLYGRTKFTILAVTSTTIQFGMLRITPSGQWLWERDIPLFIGVGYIVPALIAHDMARQGVWKT |
1 | 4xu4A | 0.11 | 0.11 | 3.89 | 0.99 | SPARKS-K | | LGAVAALIGDHSHVVTGTSSPGAATASLAELRLHLVAAVVGTYVTTALVHAAAAITWCVLGDGPGAACGVVIAVIGPAVEIALVQLGVFAYHPDSDPLYFAFGVVAALLGELAVARRPQL- |
2 | 4hkrA | 0.12 | 0.12 | 4.06 | 0.70 | FFAS-3D | | ---ASSKTSALLSGFAMVAMVEVQMLIAFAICTTLLVAVHMLALMISTCILPNPHERLHWYIETAWAFSTLLGLILFLLEIAILCWVKFYDLSRRAAWSATVVLIPVMIAIHFYRS----- |
3 | 3wdoA | 0.11 | 0.10 | 3.57 | 0.23 | HHpred | | ------VFSLRMLG----MFMVLPVLTTYLASEALIGIAIGIYGLTQAVFQIPFGLLSDRIGRKPLIVGGLAVFAAGSVIAALSDSIWG--IILGRALQGSGAIAAAVMALLSDLTREQN- |
4 | 3rceA1 | 0.10 | 0.09 | 3.39 | 0.93 | MUSTER | | MLILLTFIRLTINKDIFTLLLSPIFIMIYLWSSYSLNFAMIGLFGLYTLVFHEKIFYLAI---LMIIALSMLAWQYKLALIVLLFAIFAFKEEKINFYMI--WALIFISISILHLSGG--- |
5 | 3rkoB | 0.08 | 0.07 | 2.96 | 0.93 | CNFpred | | PTPVSALIHAAT------MVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAALVQDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLASGSVILACHHEQN |
6 | 5x3xM | 0.05 | 0.04 | 2.03 | 0.50 | HHsearch-2 | | SHPTGTGLGAVVFGPSVMAVLVIVLLFQALTLGANAFMAIVGPWVAFGV-YKLAGKAG----ASMAVAVFLAAFLGDLATYVTTSLQLALAYPDPAGLKFLAGFLTVIVVDALAGK----- |
7 | 4hzuS | 0.13 | 0.13 | 4.57 | 0.99 | Neff-PPAS | | VGIYTSAILYGRRMGLLVGGASGFLIDILTGYPVWCLFSLVIHGTQGLVVGWLLPRHHKGIRSMLLPLLVGSLVMVIGYCLATTLLFGWPAGLASIFGNVVQVGFGAGVTLSIVGPLTRLK |
8 | 2gfpA1 | 0.13 | 0.12 | 4.32 | 0.30 | HHsearch | | --LLLMLVLLVAVGQMAQTIYIPAIADMALVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLSAMQGMGTGVGGVMARTLPRDLYERTQLRH- |
9 | 6a2jA3 | 0.08 | 0.07 | 2.58 | 0.97 | SP3 | | HMIGILIYSYIVVLLLFVWIIVAAVHAITSYKDQKQIFWGWISCLIFITLQALSGIMIVYSELALGFALAHSFFIACLFGVLCYFLLLIARFRYES------------------------- |
10 | 3nxcA2 | 0.08 | 0.07 | 2.92 | 0.62 | PROSPECTOR2 | | IEFIEDSLITRINL-----------ILKDEKDTTARLRLIVLLLLGFGERNPGLTRILTGHARLQGRINQLFERIEAQLRQVLREKRMREGGYATDETLLASQILAFCMLSRFVRSEFKYR |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|