Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| Seq | LLQNLQSQDYPSAFRLINNNKDQSLQLMQTLVEWVSNLPIEEEAAVPWSKWVTAFESCWPLVLPEEKASQYWSLRLKFFKLVNMADMKHYNLSNFFNDYLLAKKATGAGLVPQDLVEFLKLAIVNTRYCDKHRGYWDLVHSNDIVVKALRLFEDVRGADAIVKDSSVVTMLLRTMVSGQEIGERATRLHAVYEVSDYLVDTFGPELTPPTIAGILEVLAAAKDWNKYLQFWEAGIGGLVPGADQRPWAHFIRLVVESGDVEMMRKLLSEGHLLWLDRLQVEIDDELKAQLGLLFAKA |
1 | 4wslA | 0.13 | 0.11 | 3.84 | 0.97 | SPARKS-K | | ISGLGKAGRLEEALELFEEMKEKSVVTYNTLISGLGKAGR-------LEEALELFEEMKEKGIVPSV---------VTYNTLISGLGKAGRL-EEALELFEEMKEKGIVPSVVTYNTLISGLGKAGRL-----------------EEALELFEEMKEKGIVP-SVVTYNTLISGLGKAGRL-------EEALELFEEMKEKG-IVPSVVTYNTLISGLGKAGRLEEALELFEEMKEKGI-VPSVVTYNTLISGLGKAGRLEEALELFEEMKE-----KGIVPSVVTYNTLISGLGKA |
2 | 5k04A1 | 0.07 | 0.06 | 2.53 | 1.30 | FFAS-3D | | IIDFIDQGNQSLITKKLAKSPLFYHVLQNEIHLKSGQR----------ELAIKKNLELLNRYPNDPLTIEKEKESSLVYENAIKKYPVS--TETLCLSWFDNSIEKY---DFKVFNRIFMYLNKNGK------------SRLHTLWYAFSFHLLLQEGET--DKASLYNSLGKKLMEGLQPFENTQEIYVYSKEIEQVLSGVTLPLDLELKLLYMKAMKENASFEALHAYTEKLLFKEKF-DDFDTWKLWILSGKEIGKSF--EELDQKLTLISLLKIELDYSRNIETSVENYYQK- |
3 | 5iwwD | 0.12 | 0.10 | 3.42 | 1.16 | HHpred | | LKACARLGALELGKQIHGSGFEGNVVVYNALIDMYSKC--G-----LLEEARKVFDEMPE---K---DVVTYNTLIDGLC----KA---GKLDE-ALKLFEEMVEKGIKPDEFTFSSVLKACARLGALEESNVVYNALISKCGLLEEARKVFDEMPE-----KDVVTYNTLIDGLCKAG-------KLDEALKLFEEMVE-KGIKPDEFTFSSVLKACARLGALELGKQIHGYVIK-SGFESNVVVYNALIDMYSKCGLLEEARKVFDE---------------------------- |
4 | 5c9sB | 0.13 | 0.11 | 3.76 | 0.79 | MUSTER | | WTASILDQAVADFERLLIGNPNS-SVVWMNYMAFQLQLS-------EIEKARELAERAL--TINFREEAEKLNIWIAMLNLENTFG------------------------TEETLEEVFSRACQYMDSYTIHTKLLGIYEISEKFDKAAELFKAT--KKFGGEKVSIWVSWGDFLISHN-------EEQEARTILGNALKALPKRNHIEVVRKFAQLEFAKGDPERGRSLFEGLVADA--PKRIDLWNVYVDQEVKAKDKKKVEDLFERIKFFFNKWLQFEESEGDEKTIEYVKAKA |
5 | 5ormA | 0.14 | 0.12 | 4.02 | 1.19 | CNFpred | | ISGLGKAGRLEEALELFEEMIVPNVVTYTTLISGLGKA-------GRLEEALELFEEMKEKGIVP--DVVTYTTLISGLGKA--------GRLEEALELFEEMKEKGIVPDVVTYTTLISGLGKA-----------------GRLEEALELFEEMKEK-GIVPDVVTYNTLISGLGKA-------GRLEEALELFEEMKEK-GIVPDVVTYNTLISGLGKAGRLEEALELFEEMKEK-GIVPDVVTYTTLISGLGKAGRLEEALELFEEMKE-----KGIVPNVVTYTTLISGLGKA |
6 | 5dizA | 0.13 | 0.09 | 3.04 | 1.03 | HHsearch-2 | | ------------------------------------------------------------------NPETNLLFNLNSCSKS-------KDLSA-ALALYDAAITSSVRLSQQHFQTLLYLCSASITD---I-----SLQYL-AIDRGFEIFDRMVSSG-ISPNEASVTSVARLAAAKG-------NGDYAFKVVKEFVSVGGSIPRLRTYAPALLCFCEKLEAEKGYEVEEHMEAAGI-ALEEAEISALLKVSAATGRENKVYRYLHK-----LREYVGCVSEETLKIIEEWFCGE |
7 | 4a1sA | 0.05 | 0.05 | 2.45 | 1.01 | Neff-PPAS | | -ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGERQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAI |
8 | 5dizA | 0.13 | 0.09 | 3.03 | 1.82 | HHsearch | | ------------------------------------------------------------------NPETNLLFNLNSCSK-------SKDLSA-ALALYDAAITSSVRLSQQHFQTLLYLCSASITD---I-----SLQYL-AIDRGFEIFDRMVSSG-ISPNEASVTSVARLAAAKG-------NGDYAFKVVKEFVSVGGSIPRLRTYAPALLCFCEKLEAEKGYEVEEHMEAAGI-ALEEAEISALLKVSAATGRENKVYRYLHK-----LREYVGCVSEETLKIIEEWFCG- |
9 | 5h7cA | 0.10 | 0.10 | 3.73 | 0.98 | PROSPECTOR2 | | LAEAKSLNVNQAVKQLAETDKEEVIEIVKELAELAKQSTDSEKEATDKELVIYIVKILAELAKQSTDSELVNEIVKQLAEVAKEATDKQSTDSELVNEIVKQLEEVAKEATDKELVEHIEKILEELEQQSDPSQSANLLAEAKSLNVNQAVKQLAEKAKEATDKEEVIEIVKELAELAKQSTDSELVNEIVKQLAEVAKEATDKELVIYIVKILAELAKQSTDSELVNEIVKQLAEVAKEATDKELVIYIVKILAQSTDSELVNEIVKQLEEVAKEATDKELVEHIEKILEELKKQS |
10 | 4g23A | 0.13 | 0.07 | 2.58 | 1.15 | SAM | | ------------------------------------------------------------------------------------------DVLE-ALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAA----TE------PNPGLSRGFDIFKQIV-D-KVVPNEATFTNGARLAVAKD-------DPE-AFDV-KQ--KAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHV-ESEV-VPEEPELAALLKVS-DTKNADKVYKTLQ-----RLRDLVRQVSKSTFD-IEEWFK-- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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