Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | DFVVEDDEGPIGVPDHLLEIPLQFTAHAHKPLKEHFKDVIEWLVHRRINPSFDRENQVYRIAWGKLNDEVSGLAQSKFASSAWRPDFIRTMRARPRILQAELPPGHLSELHGTCDACGRSNHPASWVISFAGSPYDKDTL |
1 | 3ffzA | 0.04 | 0.04 | 2.14 | 0.75 | SPARKS-K | | SYTLEEKNELTNKYDIKQ--IENELNQKVSIAMNNIDRFLTESSISYLMKIINEKINKLREYDENVKTYLLNYIIQHGSILGSQQELNSMVTDTLSIPFKLSSYTDKILISYFNKFFKRIKSSSVLNMRYKNDKYVDTSG |
2 | 2qupA | 0.08 | 0.04 | 1.72 | 0.54 | FFAS-3D | | --------------SKIDDQGKLLSETRTIEELRKYKELVKEFVGDAVELGLRLEETKIYKIVKEVDRKLLDLTDAVLAKEKKGLDILNMVGE----------------------------------------------- |
3 | 4r6iA4 | 0.04 | 0.02 | 1.11 | 0.30 | HHpred | | ------------------TKGIEHKLQLGINYDESFLTYVVLIIKKALDKNFIQYYNYNIKFIRHIKQRIQECISNLNYTVHFDC-YEISLLT----------------------------------------------- |
4 | 4kamA | 0.08 | 0.08 | 3.05 | 0.80 | MUSTER | | TFDWTQGRFPEFTTPDPSYHGVVFAELGAPAYALKARVQLLRDLGSAASPF---NAFLVAQGLETLSLRIERHVSN-------AQRVAEFLADREDVVTVNYAGLPGSPWHERAKKLSPKGTGAVLSFELAGGVEAGKAF |
5 | 3g68A | 0.12 | 0.06 | 2.01 | 0.56 | CNFpred | | ---------------------------------YYCTKLNLMLLGLQIARE---SSEKYNEEINKILDAINRFEAVYKLSKQWIERNKEKLVNSKEIRIIG--------------------------------------- |
6 | 2pffB | 0.15 | 0.14 | 4.79 | 0.41 | HHsearch-2 | | VFTQGLNLEWLENPDKDYLCPLIGVIQ-----LAHYVVTAKLL---GFTPGELRSWSFVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNPMLSISNLTQEQVQSHLPAGKQVEISVNGA-KNLVVSGPPQSLYGL |
7 | 4elnA1 | 0.11 | 0.10 | 3.60 | 0.68 | Neff-PPAS | | SPLVELNTSDLIKQKKQLWQRVQHDGAQFRSTPEERKQFKTALITLWGEQYRPERQQRWNGMMQRMAQMKWNHPELK----YMATEDLVALQAWTTDDYEVVQDVLEKEARPTAHGLAFAKCIISALHSL---------- |
8 | 4r6iA4 | 0.07 | 0.04 | 1.80 | 0.43 | HHsearch | | ------SNKTL--TSYKKTIPLEHKLQLGINYDESFLTYVVLIIKKALDKNFIQYYNYNIKFIRHIKQRIQECISNLNYTVHFD-CYEISLLTH--FETQR--------------------------------------- |
9 | 2ctzA | 0.09 | 0.09 | 3.29 | 0.64 | SP3 | | GAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQQALGPFEAWVVLLGMETLSLRAERHVENT---LHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRF |
10 | 4akfA1 | 0.04 | 0.04 | 1.92 | 0.51 | PROSPECTOR2 | | KLIEGLDITKLLDN------SGVGFRARGDRFRNILDVIYMMQMKKHLESVQQPIPPEQQMNYGILKQKIALYEDKLSRAGIVINNVDDIINLTKSVKDLEKLDKALNSIPTELKGAKGEQLENPELERYSEDTTPQQSI |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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