Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | PQEAKLPCSGVGATPQYHLHPARPGHTSELQHRGSNTFTVVPKRKPGAFQEPHFSQTNGEPQPQKPEEEEAGSLSGPHAALENTLKKRYPTVHEIEVIGGYLALQKSCLTKAGSSRKKMKISFNDKSLQTTFEYPSESSLV |
1 | 2mpvA | 0.10 | 0.09 | 3.17 | 0.87 | SPARKS-K | | ---------NFCDITITPATNRDVNVDRSANIDLSFTIRQPQRADAGMRGEAKPQGGNKSAGFTLASPRFSYIPNNPANIMNGTNPGVYQLGMQGSITGLYEVVLNAELVTNDNKQNA-----TAVAKTATSTITVV---- |
2 | 2gycA | 0.18 | 0.15 | 4.84 | 0.33 | FFAS-3D | | -----LPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWPTVRGTAMNGGGRNFGKHPVTPWGVQTKGKKT-------------------- |
3 | 2fqhA | 0.18 | 0.12 | 3.91 | 0.38 | HHpred | | -------------------------------------IVVNGR-EAGSKKGCALGATWGDYHAD--FLGEDLDICAEFMNMMDEAFKHRHNVDELHIDGNYQ-LGRNVLLKNGEDRLRFYVKFGPGAVIKEFK-------- |
4 | 1zvoC | 0.12 | 0.11 | 4.01 | 0.89 | MUSTER | | TASKSKKEIFRWPESPKAQASSVPTAQPQAEGSLAK---ATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDL-WLRDKATF--TCFV-VGSDLKDAHLTVAGKVPTGGVEQSQHSRLT |
5 | 3t3nA | 0.17 | 0.04 | 1.16 | 0.57 | CNFpred | | --------------------------------------------------------------------------------------------VEIIPLGGMGEIGKNITVFRF----DEIFVLDG---------------- |
6 | 1ttuA3 | 0.28 | 0.09 | 2.82 | 0.61 | HHsearch-2 | | ---------------------------------------------------------------------------------------PCPVVGSLEVDGHRVELHGRDF------KPNLKVWFGATPVET--TFRSEESLH |
7 | 3jc8Pa | 0.10 | 0.10 | 3.64 | 1.33 | Neff-PPAS | | --PPAPAPPPAKPKAAAAVPVKAAPTETGAQAAPSYSYVYNPVGKRDPFRSPIDELGPVNANPVAACNEPLCSFDLDQLKLVAVVTGDASPRGHIVRRNTRMGRQGGKVTQILRD----SVTVTEVFSGNGEIIKNPVTLQ |
8 | 4wwxX3 | 0.21 | 0.07 | 2.26 | 0.65 | HHsearch | | -----------------------------------------------------------------------------SSAILTQT-----NNDEFVIVGGYQLE----------NQKRMLVSLGDNTIEISEMETPDWSI- |
9 | 2kz7C | 0.11 | 0.06 | 2.30 | 0.76 | SP3 | | ---GSWGCVRQEKRSSGLISELPSEEGRRLEHFTKL----RPKRNKKQQPTQAAVCTISILPQDGEQNGLMGRVDEG---VDEFFTKKVTGC------------------------------------------------- |
10 | 4k0mC | 0.06 | 0.06 | 2.72 | 0.71 | PROSPECTOR2 | | PRRSDQNVRGTVSLPEAGADYVGGEEIIQAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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