Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | RRCEYTGRYYCSLCHWNSSSVVPARVLHNWDFEPRKVCRASLQFLRLMVKKPVLNIDKLNPMLFTFVEDLRHVKKLREDILRMKQYLTLCHAAQQQKLLLLLHKRQHFVEGSELYSLQDLIDLHDGNLLGYLTQVHQVFLDHITKTCEGCRGRGYLCKLCDSDEVIFPLGGDTYTCTDCGSVYHRECR |
1 | 5cwnA | 0.09 | 0.09 | 3.22 | 0.71 | SPARKS-K | | -----MDPEEILERAKESLERAREASERGDEEEFRKAAEKALELAKRLVEQP--------ELVLEAAKVALRVAELAAKFKKAAESALEVAKRLVEVASKE--GDPELVLEAAKVALRVAELAAKNGDKEVFKKAAESALEVAKRLVEVASKEGDPELVEEAAKVAEEVRKLAKKQGDEEVYEKARET |
2 | 5n77A2 | 0.12 | 0.08 | 2.81 | 0.67 | FFAS-3D | | -------------VDGNAYELL-LDLFET-------KIEQLADEIENIYS----DLEQLSRVIMEGHEALSTLAELEDIGWKVRLCLMDTQRALNF-LVRKARLPGGQLEQAREI-LRDIESLLPHSLFQKVNFLMQAAMGFINIEQNRII------------------------------------- |
3 | 4l9mA | 0.18 | 0.12 | 3.97 | 0.37 | HHpred | | --------------------------------------------------DGKVNVHKLL-ALYNH---ISELVQLQEVNKDLVHLLTLSLYYTEDELSYAREPKNYDHDQDGYISQEEFEKIAAGLIRDEITAYFMRASS-------IYSKLGFFCDNCAG--FLWGVIKQGYRCKDCGMNCHKQCK |
4 | 4kblA1 | 0.13 | 0.10 | 3.34 | 0.66 | MUSTER | | --------------------------------YRYEV--TAEQILQHMVEC----IREVNEVI-PATITRILLSHFNWDKEKLMERYFDCMQCWSEYLTTKIMEEGMGQTCDILVDDNTVMRLITDSVKLKYQHLITNSFVECNRLLKWCPAPHHVVKV-QYPD------AKPVRCK-CGRQFCFNCG |
5 | 1qbkB | 0.13 | 0.09 | 3.12 | 0.61 | CNFpred | | --------------------PLMTELLKRILDSNKRVQEAACSAFATLEEEAC-YLAYILDTLVFAFYQHKNLLILYDAIGTLADSVGHNKPEYIQMLMPPLI-DKDLFPL--LECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAML------------------------------------ |
6 | 3lqhA1 | 0.26 | 0.05 | 1.48 | 0.55 | HHsearch-2 | | ---------------------------------------------------------------------------------------------------------------------------------------------------------GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCE |
7 | 6egcA | 0.11 | 0.09 | 3.05 | 0.78 | Neff-PPAS | | ----------------------IIRELERSLREQEELAKRLKELLRELERLQGSSDEDVRELLREIKELVEEIEKLAREQKYLVEELKRQGNEIIRELERSLREQEELAKRLKELLRELERLQREGSSDEDVRELLREIKELVEEIEKLAREQKYLVEELKRQ------------------------- |
8 | 3lqhA1 | 0.26 | 0.05 | 1.47 | 0.58 | HHsearch | | ---------------------------------------------------------------------------------------------------------------------------------------------------------GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKC- |
9 | 1tqgA | 0.09 | 0.05 | 1.85 | 0.78 | SP3 | | ----------------------------------GSHMEYLGVFVDETKEY-LQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGSSMAKLCHTLENILDKARNSEIKITSDLLDKIF--AGVDMITRMVDKIVS----------------------------------------------- |
10 | 3vrhA | 0.15 | 0.14 | 4.85 | 0.71 | PROSPECTOR2 | | MKCKYPKMYLCEEHTKDERILVAAYVLKKLGYGISGYSEKSEEYAKKQIGAPLVRIKEIIGEVKTRRPPCSYCGLTKRYIMNKFAYDNGFDEASFLLNNILHWNTEYLAKGGPILPLNELEEKRPGTKFNFVRGYLKKKKLFEPKECKICRMSGDICAFCKFWGLKKEINFKVSSTDEEPF------G |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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