Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | SKAEGRLHPYNNMTLLNSMEPLYVPVTQEPAPMTEDLLEEQSEVLAKLGTSAEGTHLRARMQSACLLSDMESFKAANPGCVLEDFVRWYSPRDYVKEEVADERGNTVVKGELSARMKIPGNMWVEAWETARVTPARRQRRLFDDTKEAEKVLHYL |
1 | 4hteA2 | 0.15 | 0.15 | 5.00 | 0.65 | SPARKS-K | | AAASNFFADKLSNILEKNNLSFDDVLENKHEGEDSLKIDYYTNKLEVFRNAENILEDYYDVQIKELFTDDEDYKAFNEVTDIKEKQQLIDFKTYHENTIELETGNFIPKYS-DEDRKYITEQVKLLQEKEFKVFGAIQKKLFDYDNNDLKHLYQE |
2 | 4mc0A1 | 0.14 | 0.11 | 3.75 | 0.58 | FFAS-3D | | ---------------------FYVPFPLECNPHLEEASRAMWEWIDANGLAPTERARDRMRRTGADLSGAYVWPRADLDTIGLKWIALTFRDDQIRLPARMTAHGLPVSSPTARALG---ALWQETALGRPATWCDA---------FIGHFEAFL |
3 | 1p1jA1 | 0.12 | 0.10 | 3.40 | 0.34 | HHpred | | PNYFGSMTQCSTLKLGIEGNDVYAPFNSLLPVLEYDLQQRLKAKMSLVKPYYNLDTRGKWTHLQRIRRDIQNFKEENALDKV--IVLWTANTERYVEVSPG------VNDTM-------ENLLQSIKNDHEEIAPST------------------ |
4 | 2a1dD1 | 0.15 | 0.13 | 4.35 | 0.62 | MUSTER | | SKESRVNENSKYGTLISDW---YLKGRLTS----ESQFINALDILETYHGEKEYKDAKDKLMTRILGEDQYLLERKKV--QYEEYKKLYQKYKEENPTSKLKLKTFDQYTIEDLTMR----EYNELTESLKS--AVKD---F--EKDVEKIENQ- |
5 | 4a2qA | 0.12 | 0.08 | 2.73 | 0.60 | CNFpred | | ----------------------------------EHWIVVTQRKCRLLQKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLT--------------------EFFTNVKNYTELEQHLTAKFQ--KEPELIALSNENPKLEELVCIL |
6 | 1vt4I | 0.16 | 0.12 | 4.09 | 0.55 | HHsearch-2 | | NAKAWNAFNLSCKILLTTRTTTHISLDHHSMTLTPDEVKSLL--LKYLDCRPQDLPRRLSIIAESIR-DGDNWKHVNCD-------------------------------KLTSLNVLEPAEYRKMFDRLSVFPPSAHIPTFDVIKSDVMVLHKY |
7 | 3nxcA2 | 0.08 | 0.06 | 2.31 | 0.68 | Neff-PPAS | | --------------------------------IEDSLITRINLILKDEKDTTARLRLIVLLLLGFGERNPGLTRILTGHGRINQLFERIEARQVLREKRMREGGYATDETLLASQILAFCEGMLSRFVRSEFK--------YRPTDDFDARWPLI |
8 | 1s4kA2 | 0.15 | 0.05 | 1.74 | 0.51 | HHsearch | | ------------------------------KARRQRRINAIV---DKINNRIGN-------NT-RYFPDLSSFQSIYTEG---DFIEWFAHDL----------------ERL----------C-------------------------------- |
9 | 4n9nA | 0.13 | 0.12 | 4.26 | 0.54 | SP3 | | NIFELRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINVFQGETGVAGFTNSLRLQQKR--WDEAAVNLAKSRWYNQTP-----NRAKRVITTF |
10 | 3w78A | 0.10 | 0.10 | 3.57 | 0.60 | PROSPECTOR2 | | TKPNSAEGEHPQDEVV-----TIDLFNTTVPAIDADV--FAAWGKFAAGEGFEALTEVQQQKVAAMNTNLETFMNADYPPVVKAYLDNVAIAGKTFKYTENGPVGGVYSEGAYAAVDFGRNHLKTVLGFMNANPEKAQEIKEAAIANARELAKRF |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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