>PF13843 (355 residues) DIFNRFFTPDLIEVLVTETNRYARGKEAVHWVDTSAEEIRAFLGVTIRMGLKQVPDLYDY WSNSTVLSVDGIKHVFPRKRYEELLHNLHCADNGSAIPAGQPGHDKIHKIRNVLNILNRN FQDNWTPHQQNSVDEGMIPFKGRIGFKQYMKDKPTKWSIKVWKLVDSVRAYLLHFKIYTG KTDNPGANLGEKVVLDLCTSLPRGIPWKLYFDNFYTSLSLASSLLEQGIFCTGTTRPNRV GFPHQLHMARLKTGESKWMMKEPRFFALKWKDTKDVYVLSTMAKPGVEDVRRKEKGHVEG VIKQCPSVVVDYRKYMGGVDTNDQHLSYYKCSRKSSKWWMPVFMQMLDMAIVNAW |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | DIFNRFFTPDLIEVLVTETNRYARGKEAVHWVDTSAEEIRAFLGVTIRMGLKQVPDLYDYWSNSTVLSVDGIKHVFPRKRYEELLHNLHCADNGSAIPAGQPGHDKIHKIRNVLNILNRNFQDNWTPHQQNSVDEGMIPFKGRIGFKQYMKDKPTKWSIKVWKLVDSVRAYLLHFKIYTGKTDNPGANLGEKVVLDLCTSLPRGIPWKLYFDNFYTSLSLASSLLEQGIFCTGTTRPNRVGFPHQLHMARLKTGESKWMMKEPRFFALKWKDTKDVYVLSTMAKPGVEDVRRKEKGHVEGVIKQCPSVVVDYRKYMGGVDTNDQHLSYYKCSRKSSKWWMPVFMQMLDMAIVNAW | |||||||||||||||||||
1 | 1murA | 0.05 | 0.04 | 1.98 | 1.13 | CNFpred | ------------ADWAKSVFSSAALGD------RRTARLVNVAAQLAKYS------------------GKSITISSSKAAQEGAYRFIRNP---------------NVSAEAIRKAGAMQTVKLAQEPELLAIEDTSLSYRHQVELGKLGSIQKASRGWWVHSVLLLETFRTVGLLHQEWWMRPD-SGKWLAAAATSRLRMGSMSNVIAVCDREADIHAYLQDKLAHNERFVVRSKHPRKDLYDHLKNQ---PELGGYQISIKASLSLRSGRIITLNAVLAEEINPPK-KWLLLTSEPVESLAQALRVIDIYTHRWRIEEFHKAWKTGAGAERKPDNLERMVSILSFVAVRLLQL | |||||||||||||
2 | 1vt4I | 0.15 | 0.14 | 4.57 | 1.31 | HHsearch-2 | DILSVFE-DAFVDN------FDCKDVQDMPKSILSKEEIDHI-----IMSKDAVGTLRLFWTLQEEMTEQRQPSMMTRMYIEQRDRLY--NDNQVF------AKYNVSRLQPYL-KLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVCKMDFKFWLNLKNCNSPETVLEMYQDPNTRSDHSSIHSIQRRLLKSKPYE-NCLLVLLN----VQNAKAWNAFNLSCKILLTTRSMTLTPEVKSLDLPREVLTTNPRRLSIIAESIRDGLWDNWKHVNCDLEPAEY-RKMRLSVFPPSAHIPTILLSLIWFD--VIKSDVMLHKYSLVEKQPKISIPSIYLELKVKLENEY | |||||||||||||
3 | 3ecpA | 0.07 | 0.06 | 2.43 | 0.80 | SPARKS-K | ------------------------TSALHRAADWAKSVFARLVNVAAQLAKYSGKSITISSEGSK-------------AAQEGAYRFIR-----------NPNVSAEAIRKAGAMQTVKLAQE---FPELLAIEDTTLSYRHQVALGKLGSIQDKSRGWWVHSVLLFRTVGLLHQEWWMRPDDPADAGKWLAAAATSRLRMGSMMNVIAVCDREADIHAYLQDKLAHNERFVVRSKHPRKLYLYDHLKNQPELGGYQISIPQKGSLSLRSGRNITLNAVLAEEINPP------KGETPLKWLAQALRVIDIYTRW--RIEEFHKAWERQRME-EPDNLERMVSILSFVAVRLLQL | |||||||||||||
4 | 3ecpA | 0.07 | 0.06 | 2.43 | 0.94 | FFAS-3D | ---------------LHRAADWAKSVFSSAALG-DPRRTARLVNVAAQLAKYSGKSITISSEGS-------------KAAQEGAYRFI---------------RNPNVSAEAIRKAGAMQTVKLAQEFPELLADTTSLSYRHQVELGKLGSIQDKSRGWWVHLLLEATTFRLLHQEWWMRPDDDEKESGKWLAAAATSRLRMGMSNVIAVCDREADIHAYLQDKLAHNERFVVRSKHPRKGLYLYDHLKNQPELGGYQISIPQTLNAVLAETPLKWLLLTSEPVESLAQAL---------------RVIDIY-THRWRIEEFHKAWKTGRQRMEEPDNLERMVSILSFVALRES- | |||||||||||||
5 | 3ecpA | 0.06 | 0.05 | 2.17 | 0.46 | HHpred | -----------------RAADWAKSVFSS--AALGPRRTARLVNVAAQLAKYSGKSIT---------------ISSSKAAQEGAYRFIR---NPNV------------SAEAIRKAGAMQTVKLAQFPELLAIEDTSLSYRHQVEELGKLGIQDKSRGWWVVLLLEATTFRTVGQEWWMRPDDPDEKEKWLAAAATSRLRMGMS-NVIAVCDREADIHAYLQDKLAHNERFVVRSKHPRKDVESYLYKNQPELGGYQISIPAITLAVLAEEIETPLLLLTSEPVESLA---------------QALRVIDIYTHRW-RIEEFHKWKTGAGAERQRMEEPDNLERMVILSFVA--- | |||||||||||||
6 | 3giqA | 0.11 | 0.10 | 3.45 | 0.75 | MUSTER | HDDLMFVEKPDLRWKTSQTTVVVGNCGVSAAPAPLPGNTAAALALLGETPLFADVPAYFAALDAQRPMINVA--------ALVGHANLRLAAMRDPQAAPTA-----AEQQAMQDMLQAALEAGAV-----GFSTGLAYQPGAVAQAAEL--------EGLARVA-AERRRLHTSHI---RNEADGVEAAVEEVLAIGRGT----GCATVVSHHKCTLANIDRAREQGVEVALDIYPGSSTILIPERAETIDDIRITWSTPHPECSGEYLAD------IAARWGCDKTTAARRLAPAGAIYFAMDEDEVKRIFQHPCGSD-------GLPNDARPHPRLWGSFTRVLGRYVREAR | |||||||||||||
7 | 3l54A | 0.10 | 0.07 | 2.54 | 0.83 | CNFpred | VKFEPYHDSALARFLLKRGLR--------------NKRIGHFLFWFLRSEIAQSRHYQQRFAV----ILEAYLRGCGTAMLHDFTQQVQVI-------------EMLQKVT-VISQLKQKLENLQNLPESFRVPDPGLKAGALAKCKVMA---SKKKPLWLEFKCASNETIGIIFKHGDD-------LRQDMLILQIL--------------------RIMESIWETSLDLCLLP-------------------YGCISTGD-KIGMIEIV--KDATTIAKIQQSTVGNTGAF----------KDEVLNHWLKEKSPTEEKFQAAVER---------FVYSCAGYCVATFVLGIG | |||||||||||||
8 | 1vt4I | 0.13 | 0.12 | 4.07 | 1.31 | HHsearch-2 | RLFWTLLSEEMVQKFVEEVLMYIEQRQVFAKYNVSR--LQPYVALDVCLSYKVKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI-------DPNWT-----SRSDHSSNIKLRIHSIQAELRRLLKPYENCLLVLLNVQNA------KAWNAFN--LSCKILLTTRFKQSTTTHISLD-----HHSMTLTPDEVKSLLLKYLDC-RP-QDLPVLTTNPRRLSIIAESI-------RDGL-ATWDNWKHVVLEPAEYRKMFDRSAHLSLIWFDVDVMVVVNKLHKYSLVEK----QPKESTI--SIPSIYLEYALHRSIVDHYNIPKTFDSDDLISTAWTLQQLKFYKPYICVNAI | |||||||||||||
9 | 6djyD3 | 0.09 | 0.08 | 3.10 | 0.85 | Neff-PPAS | TDVSIAM-HILSIHCSTITTRSVMVRSDNTGAFVTMSGIKDMKRVAIMNRMTDGTSANSYMHEQN--GKLYLQKVPYLEDLISAFPNGFGSTYQNDYDSSMSV----INVNALIRQVVYRVISKSIPVALLESLSRIRIIGGRDLGEMNAVYKLYKTPIEVYDAVGITPHVQISYRAQRYSFTESIPNHTLLLANYVIMNDVDGAPIS--SLEQINTIKKIISKISLGSIAYIQVYTDI--VARNINVMTKNDSFLISANADKTVFKVQVSGYKAVEMCN------------------------YEQLLQLVSDNTGVQDVLESCVLSSGILGDTGSWLLDLVLASTYIIEIRG- | |||||||||||||
10 | 3ecpA | 0.06 | 0.05 | 2.20 | 0.95 | HHsearch | --TSA----------LHRAADWAKSVFSS--AALGDPRTARLVNVAAQLAKYSGKSITISSEG-------------SKAAQEGAYRFIR---NPNV------------SAEAIRKAGAMQTVKLAQFPELLAIEDTSLSYRHQVEELGKLGIQDKSRGWWVVLLLEATTFRTVGQEWWMRPDDPKESGKWLAAAATSRLRMGMS-NVIAVCDREADIHAYLQDKLAHNERFVVRSKHPRKDVESYLYKNQPELGGYQISIPAITLAVLAEEIETPLLLLTSEPVESLA---------------QALRVIDIYTHRW-RIEEFKAWKTGAGAERQRMEEPDNLERMVILSFVAVL- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |