Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200
| | | | | | | | | | |
| Seq | AASKERRQQLWQAFQMQRKEDKRLIPYMAGVFVLMVAVFVVLGFLIGSPWLLIPLGVVLGALGAFIIFGRRVQKNVYSKAEGQPGAAGWALGNMRGQWRVKQAVVGTTHLDAVHRVIGKPGVILVAEGNPNRVKQLLAQEKKKVARVVGDTPIYEVVVGNEEGQVPLSKLERHLNKLPNNIDRKRMDTLEGRLSALSSKAPGPGMPKGPLPANAKMRS |
1 | 5cwfA | 0.13 | 0.10 | 3.49 | 0.67 | SPARKS-K | | DEMKKVMEALKKAVELAKKNDD-----EVAREIERAAKEIVEALRENN--SDEMAKVMLALAKAVLLAAKNNDDEVAREIARAAAEIVEALREN----------------------------------NSDEMAKVMLALAKAVLLAAKN----------NDDEVAAAEIVEALRENNSEMAKKMLELAKRVLDAAKNNDDETAREIARQAAEEVEAD |
2 | 5k7vA2 | 0.10 | 0.06 | 2.36 | 0.70 | FFAS-3D | | ---ELAKKAIEAIYRLAHTTDKFMAAAIEAIALLATLAILAIALLASN---HTTEEFMAKAISAIAELAKKAIEAIYRLADNHTSPTYI-------------------------------------EKAIEAIEKIARKAIKAIEMLAKNI----------TTEEYKEKAKSAIDEI-----REKAKEAIKRLE------------------------ |
3 | 2ftpA | 0.14 | 0.11 | 3.89 | 0.28 | HHpred | | ------VPQMAGSAEVFAGIRQGVTYAALAPNLKGFEAALESGVKFASEAFSRNINCSI-----KDSLERFVPVLEAARQ---------------HQVRVRGPYDGDVDPRQVAWVAGCY-EVSLGDGTAGATRRLIEAVA----SEVPRERLAGHFLGGATGNVASEDVLYLLNGLETGVDMHALVDAGQRICAVLGK----SNGSR---------- |
4 | 5cwpA | 0.13 | 0.12 | 4.31 | 0.70 | MUSTER | | AREERAKEAAERAQEAAERTDPRVRELARELKRLAQEAAEEVKRDPSSSDVNEALKLIVEAIEAAVRALEAAERTGDPEVRELA-LVRLAVEAAEEVQRNPSSSDVNEALKLIVEAIEAAVRALAAEGDPELARELVRLAVEAAEEVQRNPSSEEVNEALKKIVKAIQEAVESLREAEESGDPEKREKARERVREAVERAEEVQ-----DP-SGWLE- |
5 | 2y8nA | 0.09 | 0.07 | 2.82 | 0.69 | CNFpred | | ETDSEIKANYEKIEEVMGNIAHKKPANFWEAIQMTLCCHFGVVNE--DPQSGLSIGRLGQVLQPFYEKDVMTDEEVIELLE----LYRIKITCIE-------CFASAGVSGGVLSGNTFNNLSLGGQNYLSAVTPLEYLIVEAGMRNQTPQPTLSVLYDE---KTPEDFLMKAASCTKLGLGYPAWMNNQTGMNFMMRN------------------- |
6 | 4ev6A | 0.13 | 0.05 | 1.58 | 0.46 | HHsearch-2 | | ATYREVLTSMMDITLSLENIKMNQIMKILTMVTTIFAVPMWITGIYGPQGFWLVMALMVVIIMIFVYIFRR------------------------SGWI----------------------------------------------------------------------------------------------------------------------- |
7 | 5cwmA | 0.08 | 0.07 | 2.77 | 0.75 | Neff-PPAS | | KRVEKLVKEAEELLRQAKEKSEEDLEKALRTAEEAAREAKKVLEQAEGDPEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELAEKQGDPEVALRAVELVVR-VAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELAEKQGDPEVKRVAELLERIARESGREEARELQERVKELRER------------------- |
8 | 4fx5A1 | 0.12 | 0.09 | 3.08 | 0.41 | HHsearch | | DCSG----------SD-YPRTKA-AKEATKVAIDTLTDGAFFAVVGTEAVVYPTG-------GQLLRADYQSRAAA-----------KEAVGRLHNGGTAGRWLAGRDTAP-----SAIKHAILLTDGKDESEPADLARAIQSSI---GNFTADCRGIGEDWEPKELRKIADALLG--TVGIIRDPATLAEDFRETAKS------------------- |
9 | 3kdpA3 | 0.15 | 0.13 | 4.31 | 0.70 | SP3 | | AGQT----------PIAAEIE-HFIHIITGVAVFLGVSFFILSLILEYTAVIFLIGIIVALATVTVCLTLTAKRMALEAVEDPPRAVPDAVGKCRSGIKV--IMVTGDHPITAKAIAKGVGII---SEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTERTSPQQKLIIVEGCQRQGAI------------------- |
10 | 5hamA | 0.11 | 0.10 | 3.65 | 0.71 | PROSPECTOR2 | | AKGEEKNKILAEVQETIKIANLIPDKEERALMLGDAKKREEILKLSDAEREKLKNDLLRGGEAQQQINEDILNRATKDIKDNGKEAAVIPIEMGYGHWTV-----------LVAKYDKKDNQIILGNSINYDGQKLPKLIDKTLGNLPNKPIIIDEQTKQQTDQSATVDNGIKIAKGQAILSTEEGLRLREHHAQILTDAMFKQD------AQWIRQQ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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