Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | KGKPTGLAFIDSTHLRVCHNIRIPRHKVFDGVAKRGKSTMGWFYGFKLHLIVNHQGEIMAAKLTPGNVDDREPVHELAKGLTGSLYGDKGYISQSLVDTLAETGVTFITKKRHNMKAKALSAWDNMMLSKRFIIETINDQLKNISQIEHSRHRSL |
1 | 3ecpA | 0.14 | 0.14 | 4.61 | 1.86 | HHsearch-2 | | QEFPELLAIEDTTSLSYRHQ-VA------EELGKL-GSIQDKSRGWWVVLLLEATFRTVGQEWWMRPEKESGAAATSRLRSNVIAVCDREADIHAYLQDKLAHNERFVVRSKHPRKDVESQKSQIDIYTHRWRIEEFHKAWKTGAGAERQRMEEP |
2 | 3ecpA | 0.15 | 0.14 | 4.59 | 1.96 | HHsearch | | QEFPELLAIEDTTSLSYRHQ---V-------AEELGGSIQDKSRGWWVVLLLEATFRTVGQEWWMRPEKESGAAATSRLRSNVIAVCDREADIHAYLQDKLAHNERFVVRSKHPRKDVESPQKQIDIYTHRWRIEEFHKAWKTGAGAERQRMEE- |
3 | 1c0mC1 | 0.17 | 0.13 | 4.25 | 0.83 | SPARKS-K | | GLGPLQIWQTDFTLE-------------------PRMAPRSW-----LAVTVDTASSAIVVTQHGRVTAVQHHWATAIAVLGRAIKTDNGFTSKSTREWLARWGIAHTTGIPGNSQ-------------GQAMVERANRLLKDRIRVLAEGDGFM |
4 | 3jcaA2 | 0.21 | 0.14 | 4.51 | 0.75 | FFAS-3D | | --KPRVLWQMDVTHVSEFGKLK------------------------YVHVTVDTYSHFTFATARTGE--ATKDVLQHLAQIPQKIKTDNAYVSRSIQEFLARWKISHVTGIPYNP-------------QGQAIVERTHQNIKAQLN--------- |
5 | 3ecpA | 0.17 | 0.16 | 5.30 | 0.55 | HHpred | | QEFPELLAIEDTTSLSYRH-Q------VAEELGKLGSIQ-DKSRGWWVHSLLEATFRTVGLLWWMRPADEKATSRLRMGMSNVIAVCDREADIHAYLQDKLAHNERFVVRSKHPRKDVELYLYDHLKYTHRWRIEEFHKAWKTGAGAERQRMEEP |
6 | 2l82A | 0.14 | 0.13 | 4.44 | 0.77 | MUSTER | | ---MSQIFVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEF-EKQGV--DVRTVEDKEDFRENIREIWERYPDVVVIVTTDDIKDFIEEAKERGVEVFVVYNNKDDDRRKEAQQEFVSDKEELIEQVRRFVRKVGSLEHHHHHH- |
7 | 1mm8A | 0.15 | 0.12 | 4.14 | 0.83 | CNFpred | | QEFPELLAIEDTTSLSYRHQV----------AEELGKLGSRGWWVHSVLLLEATTFRTVGLLHQEWW-KESGKWLAAAAT-NVIAVCDREADIHAYLQDKLAHNERFVVRSKHPRKDVE--------------GLYLYDHLKNQPELGGYQISIP |
8 | 3ecpA1 | 0.19 | 0.15 | 5.01 | 1.13 | HHsearch-2 | | QEFPELLAIEDTTSLSYRH-QVAE---EL---GKLGSIQD-KSRGWWVHLLLEATFRTVGLEWWMRPDDPAD-----ADE----------KESGKWLAAAATSMSNVIAV-VE---SLAQALRVIDIYTHRWRIEEFHKAWKTGAGAERQRMEEP |
9 | 4mq3A | 0.24 | 0.17 | 5.24 | 0.78 | Neff-PPAS | | -----GIWQMDCTHFD---------------------------GKIILVGIHVESGYIWAQIIQETADCTVKAVLQLLSAHNVELQTDNGFKNQKMEGVLNYMGVKHKFGIPGNPQ-------------SQALVENVNHTLKVWIQKFLPETTSL |
10 | 3ecpA1 | 0.19 | 0.15 | 4.81 | 1.22 | HHsearch | | QEFPELLAIEDTTSLSYRH-QVA---EEL---GKLGSIQ-DKSRGWWVHLLLEATFRTVGLLHWMRPDDPA------------------DADSGKWLAAAATSMSNVIAV-VES---LAQALRVIDIYTHRWRIEEFHKAWKTGAGAERQRMEE- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|