>PF13608 (446 residues) LLIRSTFDHVLLERALETDPYYILYSALSPTVLKQMYTSKSYANALRVFVRSNQSLFQVV CTLENLARRMTRAQSIEQQIMQLQSLYPQLLDMLADNIPDSPLSWLSHHVTTDSMQRAIE LNNCDIELARGGYASINTSWRKKKEQYYADLIKEYYNALSPQAKIFVSRAYIGYLHATTP LFANARKISSEIASNICTQAYSRTIGRGISIVSSGGRKGKTWLTARGDSFYKTMISRAIK LYTPEVSAVIGVATVVGILLSTMTTLHTYLVKNKQTAQKTNEKFEELMYDKVALYIPKYD AEHSHLQGKDLDFEHFARWLMARDKKLSSFVQSHLVDTVTHQAKDDTNVWIEKCIATIVL MMMAIDSNKSDKLYQILCKLRTVFSTMGQTVVTHQSIDEILDIDESKRTTIDFERVEVMQ PTQPILKTTFEGFWDMQIQMGRTVAH |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LLIRSTFDHVLLERALETDPYYILYSALSPTVLKQMYTSKSYANALRVFVRSNQSLFQVVCTLENLARRMTRAQSIEQQIMQLQSLYPQLLDMLADNIPDSPLSWLSHHVTTDSMQRAIELNNCDIELARGGYASINTSWRKKKEQYYADLIKEYYNALSPQAKIFVSRAYIGYLHATTPLFANARKISSEIASNICTQAYSRTIGRGISIVSSGGRKGKTWLTARGDSFYKTMISRAIKLYTPEVSAVIGVATVVGILLSTMTTLHTYLVKNKQTAQKTNEKFEELMYDKVALYIPKYDAEHSHLQGKDLDFEHFARWLMARDKKLSSFVQSHLVDTVTHQAKDDTNVWIEKCIATIVLMMMAIDSNKSDKLYQILCKLRTVFSTMGQTVVTHQSIDEILDIDESKRTTIDFERVEVMQPTQPILKTTFEGFWDMQIQMGRTVAH | |||||||||||||||||||
1 | 6g70A | 0.09 | 0.08 | 3.12 | 1.46 | FFAS-3D | ---------EKFWKTVEMNPQDFTGWV---YLLQYVEQENHLMAARKAFFVHYPYCYGYWKKYADLEKRHQSDEVYRRGLQAIPLSVDHYINFLKETLDPGDQ--ETNTTIRGTFEHAVLAAGTDDKLWEM-YINWENEQLREVTAVYDRILSHHFQRFKEHVQNNLPRDLLTGEQFIQLRRELASVNTDPAKLITEIENMRHRIIEIHQEMFNYNEHEVSKRWTFEEGAQLKNWKEYLEFEIENGHERVVVLFERCVISEFWIKYAKYMENHSIEGVRHVFSRACTVHLPKKPMAHMLWAAFEEQQGNINEARIILRTFEECVLGLAMVRLRRVSLERRHGNMEEAEHLLQDAIYAIKLARHLFNLPKSRKVLLLYLNLLEMEYSCDLKNCFDKAIHGSLPIKMRITFSVEFLEDFGSD------VNKLLNAYDEHQTL------ | |||||||||||||
2 | 5vchA | 0.09 | 0.07 | 2.79 | 1.15 | CNFpred | ----------NLLQAACRETAIFIILSLLESFNANLALIDDFLNLFAQTINDSASLETRSLSAQALSYVSSLIEINPQYAAKFASLIPSVVQVLDATIR--EGDTTNTKLIFNCLNDFLIADLVKLALQIAVNSDVDEDIRVFAVQFVTSALVYRKSKILGPEITLAALKVASEEIDVEDELTNE------TPALTALRLISNASGELSPQVGVPIIEHLPTMILLAISVLVTGSPDYTLSQFDKIIPATVTGAALKCIVQLSTNLQDEVARHEQYLPLVIDIIDSAKHVVIYKYATLALDGLLEFI----AHNDIIKYLDPLMNKLFQMLETQQ-----------SPKLRAAIVSAIGSCAFAAGSGFVPYFKTSVQYLQQFIQ------------------------------------------------------------- | |||||||||||||
3 | 1vt4I | 0.12 | 0.11 | 3.70 | 1.02 | HHsearch-2 | RLFWTLSKQEEMVQKFVEEVLRINYKFLMSSMMTRMY----IEQRDRLYNDNNVSRLQPYLKLRQALLELRPAKTWVAL----DVCLSYKVQCMDFKIFLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK---------LRIHSIQAELRRLLPYENCAKAWNAFNLSCKILLTTRFKQVTDFLSTTHISLDHSDEVKSLLL-KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATNWKHVNCD-K---LTTIIESSLNVL--------------EPAEYR-------KMFDRLSVFSAHIPTILLSLIWFDVIKSDVMVVVNKLHKSLVEKQPKESDFRFLEQKIRHSILNTLICDPKYERLVNAILDFLPKI----EE-NL-ICSKYT--DLLRIALMA--------------EDEAIFEEAH-KQVQRGGGGGG | |||||||||||||
4 | 5xgcA | 0.08 | 0.08 | 2.98 | 1.17 | Neff-PPAS | PCVDAGLISPLVQLLNSKDQEVLLQTGRAHSLQAQLINMGVIPTLVKLLGIHCQNAALTEMCLVAFGNLAELESSKEQFAS--TNIAEELVKLFKKQIE-----HDKREMIFEVLAPLAENDAIKLQLVEAG-----------LVECLLEIVQQKVDSDTELKTGSDLMVLLLLGDESMQKLFEGGKGSVFQRVLSWIPSNNHQLQLAGALAIANFARNDANCIHMVDNGIVEKLMDLLDRHVGNVTVQHAALSALRNLAIPVINKAKMLSAG------VTEAVLKFLKSEMPPVQFKLLGTLRMLIDAQAEAAEQLGKNVKLVERLVEWCEA----------KDHAGVMGESNRLLSALIRHSKSKDVIKTIVQSIKHLVTMATS-EHVIMQNEALVALALIAALELGTAEKDLESAKLVHRLPEIKYNSMVLICALMGSECLHK | |||||||||||||
5 | 1vt4I | 0.12 | 0.11 | 3.86 | 1.21 | HHsearch | ETGEHQYQYKDILSVFE-DAFVDNFDC---KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEVQKFVEEVLRIN---YKFLMSPIKTE---QRQPSMMTRMYIE----QRDRLYN----DNQVFAKYNVSRYLKLRQALLELRPATWVALDVCYKVQCKMDFKIFWLNLKNCNSPETVLLQKLLYQTSRSDSSNIKLRIH-SIQAELRRLLKSKYENCLNVQNAKAWNAFNLSCKLTTRFKQVTEVKSLLLKYLDCRPQDLP-REVL-------------TTNPR---RLSIIAESIRDGLATWDNW----KHVNCDKLTTIIESSLNVLEP-A--EYRKMFDRHIPTILLSLIWFDVIKSDVMV-VVNKLHKY-SLVEKQTISIPSENEHRSIVDHYNIPKTFDSDDLIP---PYLDQYFLKFYKPYICDNDPKY- | |||||||||||||
6 | 4uzyA | 0.08 | 0.08 | 3.17 | 1.20 | PROSPECTOR2 | QQPARPIAEQTIYTLIKEQKFAEAIQHLSRAALSLLYYTGQYDMASQMYVTLYPSNEDYKLYYAQSLYKGGHQKAVTTLLVACSYEQDDLTGCRRQLDKCAPEDPDTMVNTGCIMFKEGKFEAARQKFNDYQPELLYNIALCYYKKHLAEIIEQTLKETALIEAFNLKAAIEYTEELDPVTLHNSALINMDSDPTGGFKKLNFLLQETFANLLLDVLAENPQYAGKLLSPDLYDYLQAAIGRYKSPEEAFRRFDLATRHVEQLRRLTKQIQDARIARDNDAIKRAINEYDEALEAYIPGLMAMASIYWDMELYSNVEKIFRQSHEVWKLNVAHTFFM----QDNHYKERYYEPVVVLANLCVSYIQNEEAEELMRKVEKEEERSSMQDPDKPCFHLCIEETDTWYYAKRCFLALIENLAKHMIVLKDSSFTEFLNEAEKHGKDIRR | |||||||||||||
7 | 5h11A | 0.07 | 0.06 | 2.61 | 1.46 | FFAS-3D | ----GPLGSQLIQEFQRRGEIGRMREV-----AAVLLHFKGYAHCVDVYIKQCEDIAILCQRVNKQVGEVTVMAKLIQSINKIQAHVKERLDETRNSD--------VEQYLKNLYDLYTRTTALAAKLTD---YNLGSDKHTFLSKLIKNIFSCYLESYIDMERQYLQNRSGMILQRYYDSKNHQKRIDTHGETLLSQEVVVNLLQETRHAFERCNKDLPKNAFSIFLILVEYLCVDHIDYALEIGLYFLDVVQQANTIFHLFDKQFNDLTECLHKKKEVIEQMEVKLDTGIDRTLNCMIGQMKYILTTEQKKTDFTTACSKVCAYVGKQVERVRRSM----DGKNVDTVLTELVRFHRLIHEHLSSMGGMLAICDVAEYRRSAKDFR--------VPLVLQLFDTLHALCNLLVVAPDNLKQVCSGEQLTNLDRNLLHA------ | |||||||||||||
8 | 3w3tA | 0.10 | 0.08 | 2.81 | 1.08 | CNFpred | -LLPSLL--NSLPRFLDDKDDALASVFESLIELVELAPKDMFDQIIQFTDMV-PARTTALELLTVFSENA--PQMCKSNQNYGQTLVMVTLIMMTEVSIDDDD-EVTYDHARQALDRVA-----------------LKLGGEYLAAPLFQYLQQMITSTEWRERFAAMMALSSAAEGCADVLIG----EIPKILDMVIPLINDPHPRVQYGCCNVLGQISTDFSPFIQRTAHDRILPALISKLCTSRVQTHAAAALVNFSEFASILEPYLDSLLTNLLVLLQSNKLYVQEQALTTIAFIAEAAKN---------KFIKYYDTLMPLLLNVLKV-------------NSVLKGKCMECATLIGFAVGKEKFHHSQELISILVALQN------------------------------------------------------------- | |||||||||||||
9 | 6g70A | 0.08 | 0.08 | 3.10 | 1.10 | Neff-PPAS | YLLQYVEQRKAFDKFFVHYPYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGD-QETNTTIRGTFEHAVLAAGTD----FRSDKLWEMYINWENEQGNLREVTAVYDRI--LGIPTQLYSHHFQRFKEHVQNNPRDLLTGEQFIQLRRELASVNTDPAKLITEIENMRHRIIEIHQEMFNYNEHEVSKRWTFEEGKRPYFHVKPLEKAQLKNWKEYLEFEIRVVVLFERCVISCALYEEFWIKYAKYMENHSIEGVRHVFSRACTVHLPKKPMAHMLWAAFEEQQGNINEARIILRTFEECVLGLAMVRLRRVSLERRHGNMEEAEHLLQDAIKNANNESSFYAIKLARHLFKIQKNLPKSRKVLLETKLYLNLLESCDLKQNEENILNCFDKAIHGSLPIKMRITFSQRKVEFLEDFGSDVNK | |||||||||||||
10 | 1b3ua | 0.11 | 0.11 | 3.91 | 1.18 | PROSPECTOR2 | AAADGDDSLYPIAVLIDEDVQLRLNSIKKSTIALALGVERTRSELLPFLTDTIYDLLALAEQLGTFTTLVGGPEYVHCLLPPLESLRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMAASHKVKEFCENLSADCRENVIMSQILPCIKEIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFDEKLNSLCMALKKLVEKFGKEWAHATIIPKVLAMSGDPNHMLPLRMAGDPVANPILDNSTLQSEVKPILEKLTQDQD | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |