Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | RLFTEIRWILQLALGVFLVMALISYSRRDPSWTHAAQVDHISNWAGRVGAWTSDILLLLFGLSAWWWIVLLARRISANYKRITRHEEPDENAPRDNSWLADVFAFALVLLACDGIEALRMWSLKVQLPRAPGGVIGEAVAKGVSHALGFTGGTLALLIALAIGLSLYFRFSWLSVCEKVG |
1 | 4zowA2 | 0.13 | 0.12 | 4.07 | 1.25 | SPARKS-K | | KNGRFVAGALALGFVSLPLLAWIAQSPIIIITGEQLSSYEYGLLQIFGALIAGNLLLARLVRSLIIMGGWPIMIGLLVAAAATVISSH----------AYLWMTAGLSIYAFGIGLANAGLVRLTLFA-----STVSAAMGMLQMLIFTVGIEISKHAWLNGGNGLFNLFLWLSLMVIFL |
2 | 3rkoC | 0.13 | 0.11 | 3.69 | 1.15 | CNFpred | | SSGVEYLLMLGFFIAFAVKMPVVPLH----GWLPDA----HSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASA-------------------EFAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTSQLAYQGAVIQMIAHGLSAAGLFIL--CGQLYERIH |
3 | 5aymA1 | 0.08 | 0.08 | 3.24 | 1.11 | Neff-PPAS | | -ETQLLLGRLLTRSGDQAWDFVVPFFPGKLQVAAFYYTFLLTPSSGKWIDTHPRIQVVKWGVWLQFFAILAGMVFFGMLDGLVRAGGRESWLLSVLFIALALSGVMASLGSQITDISVGNDLAPSLVADLATEVGAPILAGALFPLAGLFLIGLWNLVSFVPEYFLLRNVIQRSGLKIKV |
4 | 3rlbA | 0.20 | 0.17 | 5.35 | 1.23 | SPARKS-K | | RLLTEIAFMAALAFIIACIPILLLSLRRGL-------------TAGLVGGLIWGILSMITGHSQAFLEYLVAPVSLGIAGLFR---QKTAPLKLAPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGA------VAYSLAVNGISGILTAIAAFVILIIFVKKFPKLFIHSNY----- |
5 | 4w6vA1 | 0.12 | 0.11 | 3.91 | 0.95 | FFAS-3D | | --MWERFSFYGIRPLLILFMA-ATVFDGGMGLPREQASAIVGIFAGSPGGLLAD---NWLGQQAVWYGSILIALGHLSIA-----------LSAFFGNDLFFIGLVFIVLGTGLFKTCISVMVGTLYKPGDGSFIAPLLSGWLLRTHGWHWGFGIGGIGMLVALLIFRGFAIPAMKRYDA |
6 | 5vkqA | 0.10 | 0.09 | 3.28 | 0.23 | HHpred | | --SIKVLVLLLGMAGVGVHVSAFLFV-SKEYWPTILDFLSFHHLFGPWAIIIGDLLKDLARFLA---VLAIFVFGFSMHIVQSFANFS--PEDLRSKRMHPINSFELLFF---AVFGQTTTEQTQVDATPTQPYWVEYLFKI---V---FGIYMLVSVVVLIQLLIAMM---SDTYQRI- |
7 | 5xjjA2 | 0.14 | 0.14 | 4.72 | 0.97 | MUSTER | | SNPKLETSVLSICLTTETLHYVISS-----GVAAAVSTR-VSNNLGVARVSVLAGLCLWLVESAFFSILLFTFRNIIGYAFSNSKEVVDYVADLSPLLCLSFILDGFTAVLNGVARGSGWQHIGAWNNIFSYYLVGAPVGVYLAFRHDWCGVVIGSTVQATVLAIVTASMNWKEQAEKAR |
8 | 3rkoB | 0.18 | 0.14 | 4.72 | 1.13 | CNFpred | | ----LMWATLMLLGGAVGKSAQLPLQ----TWLADA-----MAGPTPVSALIHAATMVTAGVYLIARTHGLFLMT--------------------PEVLHLVGIVGAVTLLLAGFAALVQTDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLASGSVILACHHEQN |
9 | 5ireA | 0.16 | 0.08 | 2.78 | 0.58 | HHsearch-2 | | RSGSTIGKAFETVRGAKR-M----AVLGDTAWDFGSV----GGALNSLGKGIHAAFKSLFGGMSWFSQILIGTLLMWLGLNTK-NGS--------ISLMCLALGGVLIFLS--------TA----------------------------------------------------------- |
10 | 3o7pA2 | 0.17 | 0.16 | 5.12 | 1.10 | Neff-PPAS | | RIRHWRWAVLAQFCYVGAQTACWSYEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA---------GGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARFRSQT------ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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