Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | DLAASHSFGFFDDIPNETWKLMRSKALAFQHYMYRNSPDIGSERPWFWYLNNLQPDFTCSHVFRVGGHGDGPKWVCDPHRLRKKEDDCLVYSFGSNGQYQFEDGLIDLIGHERCEIHVFDFGNFDRSQNAGRNIHYHKWGLGSSYDEAYNIKLKSSGRHLEILTFQETQQRLNHVNRTIDLFKIDCEWCEWSNYKDWVDVDARQILVEVHGLPSTNPATNPLNTKGSDFFNAFRENSYAMFSKELNPYNSECYEIGYIK |
1 | 2py6A2 | 0.12 | 0.09 | 3.28 | 1.10 | SPARKS-K | | VRNIPAFQTLAQRLADD---YSVQTLYAVLNFHLTCEPEYYHEVERPYSTLYFRS------------------------GLLRFSDSEK-VDCGASIGE-SLAGLIGVTKGKFERVW-IEPDRINLQTLQNSRITVHGCGAGENTIRVPF-------DLIDVRPIDDII------DDAPTFIK-DIEGSELSALKGISEHKP-KLAISAYHRST----------DLLDLTNYILSIDYQIGLRHHTPDRWDTCLYFY-- |
2 | 2py6A2 | 0.10 | 0.08 | 3.13 | 0.95 | FFAS-3D | | -----------DDWGADIVRNIPAFQTLAQRLAD--------DYSVQTLYAVLNFHLT-CEPEYYHEVERPYSTLYFRSGLLRFSDSEKV---DCGASIGESLAGLIGVTKGKFERVWIEPDRINLQTLQNVLRRYTDTNITVHGCGAGENTIRVPFDLIDVRPIDDII-------DDAPTFIKDIEGSELSALKGAISEHKPKLAISAYHRST----------DLLDLTNYILSPDYQIGLRHHTPDRWDTCLYFY-- |
3 | 2py6A2 | 0.15 | 0.12 | 3.92 | 1.58 | HHpred | | ---------------VDDWGADVRNIPAFTLAQR-LADDYSVQTAVLNFHLTCEPEYY----HEV-ERPYSTLYFRSG-LLRFS-DSEK-VDCGASIGE-SLAGLIGVTGK-FERVW-IEPDRINLQTLRASRITVHGCGAGENTIRVPF-------DLIDVRPIDDIID----D--APTFIK-DIEGSELSALKGARREHKPKLAISAHRST-----------DLLDLTNYILSIDYQIGLRHHTPDRWDTCLYFY-- |
4 | 2py6A2 | 0.12 | 0.10 | 3.53 | 1.03 | MUSTER | | ---------------DYRVDDWGADIVRNIPAFQTLAQRLADDYSVQTLYAVLNFHLTCEPEYYHEVERPYSTLYFRSGLLRFSDSE--KVDCGASI--ESLAGLIGVTKGKFERVW-IEPDRIYTDTNFASRITVHGCGAGENTIRVPF-------DLIDVRPIDDII------DDAPTFIK--IEGSELSALKGARRAKPKLAISAYHRS-----------TDLLDLTNYILSIDYQIGLRHHTPDRWDTCLYFY-- |
5 | 2py6A | 0.14 | 0.11 | 3.71 | 1.49 | CNFpred | | ------------------GADIVRNIPAFQTLAQRL------DDYSVQTLYAVLLTCEPEYYHEVERPYSTLYFRSGLLRFS---DSEKMVDCGASIG-ESLAGLIGVTKGKFERVWMIEPDRINLQTLQ-SRITVHGCGAGENTIRVPF-------DLIDVRPIDDIID------DAPTFIKMDIEGSELSALKGARRAIKPKLAISAYHR----------STDLLDLTNYILSIRYQIGLRHHTPDRWDTCLYFY-- |
6 | 2py6A2 | 0.16 | 0.13 | 4.25 | 2.16 | HHsearch-2 | | ------------DYRVDDWGADVRNIPAFQTLAQRLADDYSVQTLYAVLNFHLTCEPEY--YHEVERPYSTLYFRSGL--LRFS-DSEK-VDCGASIGE-SLAGLIGVTGK-FERVW-IEPDRINLQTLRASRITVHGCGAGENTIRVPF-------DLIDVRPIDDIID----D--APTFIK-DIEGSELSALKGARRHKPKLAISAYHRST-----------DLLDLTNYILSIDYQIGLRHHTPDRWDTCLYFY-- |
7 | 2py6A2 | 0.12 | 0.09 | 3.28 | 1.02 | Neff-PPAS | | DYRVDDWGADIVRADDYSVQTLYAVLNFHLTCEPEYYHEVERPYSTLYFRSGLL-----------------------------RFSDSEKVDCGAS-IGESLAGLIGVTKGKFERVW-IEPDRRYTDTNFASRITVHGCGAGENTIRVPF-------DLIDVRPIDDIIDD------APTFIK-DIEGSELSALKGARRAHKPKLAISAYHR----------STDLLDLTNYILSIDYQIGLRHHTPDRWDTCLYFY-- |
8 | 2py6A2 | 0.16 | 0.13 | 4.35 | 2.32 | HHsearch | | -------DYRVDD-----WGADVRNIPAFQTLAQRLADDYSVQTLYAVFHLTCEPEYY----HEVERPYSTLYFRSGL--LRFS-DSEK-VDCGASIGE-SLAGLIGVTGK-FERVW-IEPDRINLQTLRASRITVHGCGAGENTIRVPF-------DLIDVRPIDDIID----D--APTFIK-DIEGSELSALKGARRHKPKLAISAYHRST-----------DLLDLTNYILSIDYQIGLRHHTPDRWDTCLYFY-- |
9 | 2py6A2 | 0.13 | 0.10 | 3.50 | 1.24 | PROSPECTOR2 | | DYRVDDWGADIVR-NIPAFQTLVQTLYAVLNFHLTCEP--------EYYHEVERPYSTLYFRSGLLRFSDSE-----------------KVDCGASIG-ESLAGLIGVTKGKFERVW-IEPDRINLQTLFASRITVHGCGAGENTIRVP-------FDLIDVRPIDDII------DDAPTFIK-DIEGSELSALKGARREHKPKLAISAYHRST----------DLLDLTNYILSPDYQIGLRHHTPDRWDT--CLYFY |
10 | 2py6A2 | 0.17 | 0.08 | 2.68 | 1.52 | SAM | | -------------------------------------------------------------------------------------DSEK-VDCGASGESLA--GLIGVTGK-FERVW-IEPDRINLQTLRASRITVHGCGAGENTIRVPF-------DLIDVRPIDDIID----D--APTFIK-DIEGSELSALKGARRHKPKLAISAYHRSTDL-----------LDLTNYILSIDYQIG------------------ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|