Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | QLTGVVIGAAIAVHRELGPGVDEAACEQALSLKLTALGIPHQCQKPLPLLYKGASLDCGYRLDLLIDGRLPVELKCVDKILPIHVAQTLTYLRLGGFPLGLLINFEVCALKQGIRRL |
1 | 3s1sA1 | 0.18 | 0.17 | 5.55 | 1.13 | SPARKS-K | | --LNNCVFSYLPSYGDDEVSVYHPICEAALNQALVNTGLDSTYEVVHHELVGSI------EADFVIKNKLIVEVKRTKSSSTRYRLQAQSYVREANQHYYCLTNLEIIDFFKHDPNK |
2 | 3s1sA1 | 0.21 | 0.18 | 5.68 | 1.39 | HHsearch | | ------------LNNSYLPSVYHPICEAALNQALVNTGLDSTYEVVHH-----ELVG-SIEADFVIKNLLIVEVKRTKSVSTRYRLQAQSYVREAEQHYYCLTNLEIIDFKHDPNK- |
3 | 3h1tA1 | 0.17 | 0.15 | 4.76 | 1.27 | SP3 | | ------------------SALNADTCRVYVTPKLKESGWEITEQYTFVQFKGSKVQGEQKRADYLLKYIAVVEAKP-ENSPVGQGQQAKDYAEILGLKFAYSTNGHEILETTGEEQL |
4 | 5gkeA2 | 0.15 | 0.13 | 4.29 | 1.12 | SPARKS-K | | ------------DYEELALTGSEAEMAELIFENPEVIE------PGFKPLFREKAIGTG-IVAVLGRDIVVLELK-RRRAELHAVRQLKSYVEILRKVRGILVAPSLTSGAKRLLEK |
5 | 3h1tA1 | 0.20 | 0.15 | 4.67 | 0.84 | FFAS-3D | | -------------------ALNEATCRVYVTPKLKESGWEITEQYTVQFKGSKVQRGEQKRADYLLKYIAVVEAKPEN-SPVGQGQQAKDYAEILGLKFAYSTNGHE---------- |
6 | 4ic1A | 0.20 | 0.16 | 5.21 | 0.60 | HHpred | | ---SAILGD--ILHL-------------GLESVLKGNFAETEVETLREINVGGKVYKIKGRADAIIRKSIVIEIKTSRSDLIHHK-QLQIYLWLFSAEKGILVYITPDRIAYEINE- |
7 | 4ic1A | 0.17 | 0.16 | 5.35 | 0.93 | MUSTER | | EYKELAISQVYAPSAILG----DILHLGLESVLKGNFNAETEVETLREINVGGKVYKIKGRADAIIRKSIVIEIKTDKGLPLIHHKQLQIYLWLFSAEKGILVYITPDRINEPLDEA |
8 | 4onbA | 0.17 | 0.15 | 4.79 | 0.68 | CNFpred | | INDFEYCPRLLWVQHKLGLK-RGRILHERYERLLSQY---ENVVAEYKVEIG----DLVGVVDLVIKEYIPVEIKTGF-SKEAHKTQLQIYISMLKARFGYLVYR------NHVEVV |
9 | 3h1tA1 | 0.19 | 0.16 | 5.22 | 0.91 | HHsearch-2 | | ------------------SALNEADTCVYVTPKLKESGWENNPTEQYTFTDKGSQRGEQKRADYLLKYIAVVEAKPENSPVGQG-QQAKDYAEILGLKFAYSTNGHEILEFDGEQLL |
10 | 5gkeA2 | 0.16 | 0.12 | 3.98 | 0.91 | Neff-PPAS | | ------------------LTGSEAEMAELIFENPEVIEPGLFREKAIG----------TGIVAVLGRDIVVLELK-RRRAELHAVRQLKSYVEILRKVRGILVAPSLTSGKEGLEFR |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|