Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | VDGTHVRFKGPGNDVKHLYYNRKGYYSINAMVICDHNMKIICVDGRHPGANHDAFIWEASTADLKLQNDFDRGKRNFWILGDGGYKLKPFLMTPYRNPRDLAETRYNRKHASARNVVERCFGLLKNRFRCIIGSRGLHYSPEKATQIINACCALHN |
1 | 3jcaA2 | 0.12 | 0.10 | 3.42 | 0.83 | SPARKS-K | | RVLWQMDVTHVSEFGKLKY----------VHVTVDTYSHFTFATARTGEA----TKDVLQHLAQSFAYMGIPQK----IKTDNAYVSRSIISHVTGIPYNP----------QGQAIVERTHQNIKAQLNKLQKAGKYYTPHHLLAHALFVLNHVNM |
2 | 3jcaA2 | 0.10 | 0.08 | 2.83 | 0.62 | FFAS-3D | | MD-----VTHVSEFGKLKY----------VHVTVDTYSHFTFATA--RTGEATKDVLQ--HLAQSFAYMGIPQ----KIKTDNA-----------PAYVSRSIQEFLARWPQGQAIVERTHQNIKAQLNKLQKAGKYYTPHHLLAHALFV----LN |
3 | 3ecpA | 0.10 | 0.10 | 3.55 | 0.31 | HHpred | | EDTTSLSYRHQVAELGKLGSIQDKSRGWWVVLLLEATFRTVGLEW-WMRPEKESGKWLAA--AATSRLRMGSMMSNVIAVCDREADIHAYAVEPPKGPEPLAQALRVIDIYTHRWRIEEFHKAWKTGAGAER---QRMEEPDNLERMVSILSFVA- |
4 | 2aacA | 0.09 | 0.08 | 3.17 | 0.77 | MUSTER | | LVAGLTPIE-ANGYLDFFIDRPLGMKGYILNLTIRGQGVVKN----RPGDI----LLFPPGEIHHYGRHPEAREWYHQWVY---FRPRAYWHEWLNWPSIFANTGFFRPDEAHQPHFSDLFGQIINAGQG-EGRYSELLAINLLEQLLLRRMEAIN |
5 | 1cz9A | 0.17 | 0.12 | 3.99 | 0.61 | CNFpred | | --------------------------SWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGR---------PKAIKTDNG----SCFTSK------STREWLAR-NSQGQAMVERANRLLKDKIRVLAEGFMKRIPTSKQGELLAKAMYALN |
6 | 2pffB | 0.16 | 0.14 | 4.70 | 0.78 | HHsearch-2 | | NDTTLVKAKRPFD-KKSNSALF--------RAVGEGNAQLVAIFG-GQGNTDD--YFEELRDLYQLETLRTTLD-AEKV-FTQGLNILEWLENPSNTPLSIPISPLESFFVSVRKAITVLFFIGVRCYEAYPN---TSLPPSILERIVDCIIRLPV |
7 | 2aacA | 0.06 | 0.06 | 2.53 | 0.89 | Neff-PPAS | | HLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRAYWHEWLNWPSIFANTGFFRPDEAHQPHFSDLFGQIINAGQG-----EGRYSELLAINLLEQLLLRRMEAIN |
8 | 3ecpA | 0.10 | 0.10 | 3.53 | 0.60 | HHsearch | | EDTTSLSYRHQVAELGKLGSIQDKSRGWWVVLLLEATFRTVGQEW-WMRPEKESGAAATSR--LRMGS----MMSNVIAVCDREADIHANAVEPKGTPESLAQALRVIDIYTHRWRIEEFHKAWKTGAGAER---QRMEEPDNLERMVSILSFVA- |
9 | 2yr4A | 0.06 | 0.06 | 2.47 | 0.65 | SP3 | | DAAPIKVFPNPGKVPTEFVFGN------RVDRYVGSD------PKDWEDPDSPTLKVLG-VVAGGLVGNPQGENVAMYPIANVDPAKIAAILNAATPPADALERIQTKYWPEFIAQYDGLGAAVREIVGTLPPVDGVLDVDESISYYVELFGRFGF |
10 | 1cxqa | 0.17 | 0.13 | 4.43 | 0.60 | PROSPECTOR2 | | GRGLQTDFTLEPRMAPRSWL---------AVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVL---------GRPKAIKTDNG--------------SCFTSKSTREWLARWQAMVERANRLLKDKIRAEGDGFMKRIPTSKQGELLAKAMYALN |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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