Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80
| | | | |
| Seq | YNENMVNWEELEKVGISKASLEQQGLLDSMLKGYKTNKLVPLTIHLSGLLTAKLDARLSLIPQQDGQVGLAIHGIRKEPQLERP |
1 | 4or8A2 | 0.16 | 0.13 | 4.37 | 1.00 | SPARKS-K | | ---GMTLLHHLKSNFVVPEWQQTRNLFSHLFKNPKSTKPSSIEIKLTGQQIIITRVFLVEVRRISESVVFGLV----------- |
2 | 5iu1A | 0.06 | 0.06 | 2.55 | 1.18 | Neff-PPAS | | FKEGEVMGRNLVDLIVPPNAKTAALDTIMRVGQGE-VWIGQFSCVRRDNAILNTVVTQKPILDDDQKISGISVCTEPYSM---- |
3 | 3h9wA | 0.06 | 0.06 | 2.55 | 0.99 | SPARKS-K | | WPQGSWSVEDWATR--HPEDQEWVVFCVKQSECGV-DHEADYRALHRDGHYVWIRDVVHVVRDDSGEVEALIGFFDISLEHH-- |
4 | 5hwtA | 0.21 | 0.19 | 6.07 | 0.69 | FFAS-3D | | -----VNQVALEGGGITLEEIRGKPLVETASSGEFVRCDVEILGKSGGREVIAVDFSLLPICNEEGSIVAEGRNITDKKKAEA- |
5 | 5hwtA | 0.19 | 0.18 | 5.74 | 0.20 | HHpred | | --VLEVNQVALEGGGITLEEIRGKRLVETASSGEFVRCDVEILGKSGGREVIAVDFSLLPICNEEGSIVYLLAEGRNIT----- |
6 | 4hh2A | 0.13 | 0.13 | 4.51 | 0.82 | MUSTER | | GQLSEWEGRPLEEV-LTAESVAKFRLRSEGLEPGRGSVAVELNHIDPRSFEFPIRYILHRL-PADRSILMLGRDLRPIAEVQQQ |
7 | 4rnyA | 0.12 | 0.11 | 3.81 | 0.67 | CNFpred | | ------LLGFLEKNHIPQKLYYNLSQDKELSAEIQSNVTYYTLRDANTLIQALIPLQIHIYKKG-EDYFLDFIPIIFTRKEKTL |
8 | 5nd5A | 0.05 | 0.05 | 2.25 | 0.27 | HHsearch-2 | | LGPDET-AATRKNLNWPQDVYHKEAEFEALTSCKLPENALPH-FKPED-KGLATRQHINALAPALPGLIGGSSGDFQERNLRFG |
9 | 3lyxA | 0.07 | 0.07 | 2.88 | 1.16 | Neff-PPAS | | YSKEQAIGQPVNMLHVPGDTEHITSEVISAVE-NQGKWTGEIRMLHKDGHIGWIESMCVPIYGENYQMVGALGINRDITKR--- |
10 | 1ej5A | 0.16 | 0.13 | 4.37 | 0.47 | HHsearch | | FDVNNLDLRSLSRAGISEAQLTDAETSKLIYDFIESGGSQS-----SEGLVGALMHVMQKRSRA---IHS----S-DEGEDQA- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|